PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000948.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 544aa    MW: 60874.3 Da    PI: 7.7404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000948.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-12341151198
                 HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++++++p +    + ++  +  t++l+ +sg  +++ +  +k  g++vl++GW  F+ a++L+e+D++vFk+ g+s+f  +v++++
  Do000948.1  34 DCRSCMRIPQEAGCLFRKI--NYETIKLNALSGCLYDIGV--SKEMGEIVLRSGWDIFATAHNLEENDSLVFKFCGTSSF--KVQIYS 115
                 4555677777775333333..3448***************..********************************999999..887765 PP
2B339.59.8e-131982791196
                 HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  k + +++p   ++   +++  + t++le ++++ +++    +++++++vl++GW  Fv a++++egD ++F+++g+s+    v +
  Do000948.1 198 VKGCYIRIPSILLK-DAIDEVFKATVKLEAPDSNIYSISA-AQQSDNEIVLQSGWDAFVVAHRVQEGDLIIFRYKGNSRL--EVFI 279
                 45677888988884.446667889***************9.5777777**************************998777..4444 PP
3B338.52e-12441539699
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                 ++s   k  ++++  ++a+++  + +++ tl+le  ++++W   l +    ++ +++  ++ GW eFv +n+L  gD+++F++++  ++ ++ v+++r+
  Do000948.1 441 KTSTGEKGFLMRFATEYARRCLPSATQDLTLRLEGCRSKQWHTVLHVqggqSRARNEARIAVGWAEFVTDNRLWLGDICMFEMVKItRRLKMIVHLIRQ 539
                 34555555667777788888866667999****************77776666666699***********************99887999999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-1323116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.0824117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-1227116IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.006427117IPR003340B3 DNA binding domain
PfamPF023622.3E-1037115IPR003340B3 DNA binding domain
CDDcd100171.13E-955115No hitNo description
Gene3DG3DSA:2.40.330.105.6E-17176291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-15182287IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-13185281No hitNo description
SMARTSM010190.019187283IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884188283IPR003340B3 DNA binding domain
PfamPF023623.8E-10194278IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-14428539IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-13428539IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-12433538No hitNo description
PfamPF023622.0E-10435539IPR003340B3 DNA binding domain
SMARTSM010190.12435540IPR003340B3 DNA binding domain
PROSITE profilePS5086310.461436540IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MGNEKMRSHV VADEDFRSCM GNEKMRFHVV ADEDCRSCMR IPQEAGCLFR KINYETIKLN  60
ALSGCLYDIG VSKEMGEIVL RSGWDIFATA HNLEENDSLV FKFCGTSSFK VQIYSSHGGS  120
QKISSCVSPL PEILEAVLPR NEVPYPGHAH KAADLDYFTL GGSRLTKAQD KKVLEMAHTI  180
RSQIPLYVAV MKKTNVDVKG CYIRIPSILL KDAIDEVFKA TVKLEAPDSN IYSISAAQQS  240
DNEIVLQSGW DAFVVAHRVQ EGDLIIFRYK GNSRLEVFIL DRNGGQKTSS SFGIGYVPNT  300
QEMSDDSVQV IDPPHKTVDI IDLSSSNSSD DDNTVAAYNA KSASPQKRQL DHCAKNRRMD  360
STSSPSIKSH HEHETHEDLQ ASMVDGVKQS PLYSNNSEGP SLPPYIISRN ITLSRAQEKM  420
VLEKVQAIGS KFPIFVSVMN KTSTGEKGFL MRFATEYARR CLPSATQDLT LRLEGCRSKQ  480
WHTVLHVQGG QSRARNEARI AVGWAEFVTD NRLWLGDICM FEMVKITRRL KMIVHLIRQS  540
SVHV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000948.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439346.10.0B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A1E5W3P10.0A0A1E5W3P1_9POAL; Uncharacterized protein
STRINGPavir.J03783.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16378713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-16B3 family protein