PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000759.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 507aa MW: 53359.8 Da PI: 4.707 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.5e-11 | 323 | 368 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ + +Ka++L + ++Y+k Lq Do000759.1 323 HSIAERLRREKISDRMKNLQELVPNS-----NRTDKASMLDEIIDYVKFLQ 368 99***********************7.....59*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.03E-12 | 316 | 372 | No hit | No description |
SuperFamily | SSF47459 | 7.59E-17 | 316 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.18 | 318 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-16 | 320 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.0E-9 | 323 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-13 | 324 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MGSFADPFIP APAWPQDVVF TGTSWSGSDP ASLADSAGAY LAAAPDQDTE FHLLNGSSPA 60 LLNGNAKEIV SPVELHEQLL QAQLQDDVMQ GLNFEVDGAL MAGALGSVLS TPCAISLADS 120 GPVVCSSNDS SGSEQSGLPQ FLPGEQPVPV PAAWPSPFAQ IASLVGEETS QSFGFHAVSN 180 DDLLREACAA DGKKYPQLGN VPSAPLQLHN DIEFNTGKML SFAPGPGQQV NTNLEDLQIS 240 QKEFCGLHHL NLSSLVSGQL SSFNATGVAR NPKQSNGVSN GKNGLNAAPF MAQSEVPNGS 300 VIAGNGAPKT RIRARRGQAT DPHSIAERLR REKISDRMKN LQELVPNSNR TDKASMLDEI 360 IDYVKFLQLQ VKVLSMSRLG ATEAVVPLLT KSQTESSSGG LLLSPRSGRQ QAGGGSLLGQ 420 PELRDGAAFE QEVVQLMENN MTTAMQYLQS KGLCLMPIAL ASAISDQKGT NSGAADEDGA 480 GGEKHDAQEM LRGLKAFGGV REMRSRA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000759.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974956 | 1e-154 | EU974956.1 Zea mays clone 461679 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952733.1 | 0.0 | uncharacterized protein LOC101783147 | ||||
TrEMBL | A0A1E5VT88 | 0.0 | A0A1E5VT88_9POAL; Transcription factor bHLH82 | ||||
STRING | Si016939m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3254 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 1e-53 | LJRHL1-like 3 |