PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000758.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 320aa MW: 34991.1 Da PI: 6.0611 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 155 | 209 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F++++++s +++ +LAk+l+L rqV vWFqNrRa+ k Do000758.1 155 RKKLRLSKEQSAFLEDSFKEHNTLSPKQKSDLAKRLNLRPRQVEVWFQNRRARTK 209 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125 | 3.4e-40 | 155 | 243 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr +++l++en+rL++ev+eLr+ Do000758.1 155 RKKLRLSKEQSAFLEDSFKEHNTLSPKQKSDLAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRFCENLAQENRRLHREVAELRA 243 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-18 | 137 | 209 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.232 | 151 | 211 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.41E-18 | 152 | 220 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.3E-17 | 153 | 215 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.1E-16 | 155 | 209 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.10E-17 | 155 | 212 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 186 | 209 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.6E-21 | 211 | 254 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.9E-10 | 211 | 244 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MELELSLGDS PAPAKGNLTP VLTPTHAGKG EDHELVLELG VGTSKRIEQD NQKTSTQPED 60 VQDQEEDDEA CFRSKSPVEL SLGCPLLPAS AEIGSVNSEE CGRGFHVNTV LVDGDAVQGR 120 SLSTSSLPME VPVRQAADEE AAEDEENSGV GGGARKKLRL SKEQSAFLED SFKEHNTLSP 180 KQKSDLAKRL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRFCENLAQE NRRLHREVAE 240 LRALGTTPYP FYGHLPAAGF SSTARVCSSC DNKVAAHYPA ITSTSPVVAP PSPVPTLFAR 300 PHFGPFTVHP VLRRQPSATS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 211 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000758.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952725.1 | 0.0 | homeobox-leucine zipper protein HOX7 | ||||
Swissprot | A2X674 | 1e-108 | HOX7_ORYSI; Homeobox-leucine zipper protein HOX7 | ||||
TrEMBL | A0A1E5VT78 | 0.0 | A0A1E5VT78_9POAL; Homeobox-leucine zipper protein HOX7 | ||||
STRING | Si019736m | 1e-175 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12894 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-54 | homeobox from Arabidopsis thaliana |