PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000707.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SBP
Protein Properties Length: 407aa    MW: 44001.4 Da    PI: 9.0382
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000707.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.31.4e-40181257278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 CqvegC+ dls+ak+yhr+hkvCe+hskap+v+v+gle+rfCqqCsrfh l+ fD++krsCrrrL++hn+rrrk+q+
  Do000707.1 181 CQVEGCKIDLSSAKDYHRKHKVCEAHSKAPKVVVAGLERRFCQQCSRFHGLDVFDQKKRSCRRRLNDHNARRRKQQP 257
                 **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.0E-33174242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.53178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.32E-38180260IPR004333Transcription factor, SBP-box
PfamPF031104.3E-31181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGSFGMDWNQ KGSVLWDWEN LPPIGANENP KMIAPQAEAK FSGIEVTRHG SVHSSYGTFT  60
SSSEMGYGSS KSSISASIDS SPKAGNNMEL NFASARVPDK NTGKNSDLGK VDDARTSPSS  120
VIAVSSGEPV LSLKLGKRTY FEDVCGGQSV KSSPSDTSAV TPPAALVKKA KAVQNAQKSY  180
CQVEGCKIDL SSAKDYHRKH KVCEAHSKAP KVVVAGLERR FCQQCSRFHG LDVFDQKKRS  240
CRRRLNDHNA RRRKQQPEAI SYGSSRLSAM FYGTDKHLIA LWFFETSALL FFFKQLFCAE  300
ASVVVSDSNP DLQRALSLLS NNPAGAGNNQ PTTQLHPGLS TLASASNAAM QASPPGLWQD  360
GASMDLHARF QALIPLGHDS AMAAVHELQL PKPSSFDGSS SHYDLMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-271812541184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236253KKRSCRRRLNDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000707.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826432.11e-169squamosa promoter-binding-like protein 3
RefseqXP_025826439.11e-169squamosa promoter-binding-like protein 3
RefseqXP_025826447.11e-169squamosa promoter-binding-like protein 3
SwissprotA2X0Q61e-127SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z81e-127SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A1E5VW920.0A0A1E5VW92_9POAL; Squamosa promoter-binding-like protein 12
STRINGPavir.Ab00358.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-39squamosa promoter binding protein-like 2