PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000558.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 584aa    MW: 64531.7 Da    PI: 5.6753
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000558.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-13387434355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++h + ErrRR+++N+ f  L++ +P+      +K++Ka+iL +++ Y+k+L+
  Do000558.1 387 KNHVMSERRRREKLNEMFLILKSFIPST-----RKVDKASILAETIAYLKELE 434
                 5899***********************8.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.6E-4719204IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.682384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-14387438No hitNo description
SuperFamilySSF474592.49E-17387450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16388445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-11388434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15390439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MALSASPVEE EPQPGNDFRN HLATAVRSIN WSYAVFWSVS STGGPGVLTW KDGFYNGEVK  60
TRKVTNSTTQ LTADQLALQR SEQLRELHES LQLSAECGGG DHRGRPPRPV AALSPEDLGD  120
TEWFYVVCMT YTFRPGQGLP GKSLVKKEHV WLRNAHLADS KTFPRVLFAK TIVCIPLMDG  180
VLELGTTEST MEDPDLVNRA TTPFGELQFP AACTEEPNSS PSANDTGEYS DIIVFEDMDH  240
TAAMEAMISE VHELRKVTDE CLPHANVKEV TMEINELYSI CEGLDVQPLE DDWISIDGLL  300
EVPPSPEPSP EVATDNADHT LSTPVDRYRL TSFTPWTRSD TDDVGVTATG REPQKLLKKV  360
LSGGAWANNG GGDGSTTRTS TQESGIKNHV MSERRRREKL NEMFLILKSF IPSTRKVDKA  420
SILAETIAYL KELERRVQEL ESTKELSVSR PTASVLRRHG HDDEVVRSRK QVSGAKRKKG  480
SELDAGGDRQ KDQHWVRSKD GPSNVSITVA DKEVLLDVQC RWKERLIARV FDAVKRLHLN  540
ILSVQSSTLD GLMGLKVRAQ FASSAAVAPG MITEALQKAI SSKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-203020423192Transcription factor MYC3
4rqw_B8e-203020423192Transcription factor MYC3
4rs9_A8e-203020423192Transcription factor MYC3
4yz6_A8e-203020423192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392397ERRRRE
2393398RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000558.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3360783e-41AY336078.1 Zea mays BHLH protein (r2k1) mRNA, complete cds.
GenBankKJ7268003e-41KJ726800.1 Zea mays clone pUT3027 bHLH transcription factor (bHLH1) mRNA, partial cds.
GenBankKP0276403e-41KP027640.1 Zea mays cultivar Red diamond bHLH protein mRNA, complete cds.
GenBankMZEREGG3e-41M26227.1 Zea mays Lc regulatory protein mRNA, complete cds.
GenBankX158063e-41X15806.1 Maize anthocyanin regulatory R-S mRNA.
GenBankX607063e-41X60706.1 Maize SN mRNA, involved in tissue-specific anthocyanin expression.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808676.10.0anthocyanin regulatory R-S protein-like
SwissprotP135260.0ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A1E5WGQ20.0A0A1E5WGQ2_9POAL; Anthocyanin regulatory Lc protein
STRINGSi000845m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.15e-61bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]