PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000531.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 350aa    MW: 37740.7 Da    PI: 7.2438
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000531.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73e-0696122127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C++f +t  Ck+ ++CkF+H++
  Do000531.1  96 PGEPDCPYFGKTSKCKFKSKCKFNHPK 122
                 5789*********************96 PP
2zf-CCCH39.41e-12151175327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C f+a+tG Ck+G++CkF+H++
  Do000531.1 151 EPVCTFYAKTGKCKFGANCKFNHPK 175
                 789********************96 PP
3zf-CCCH35.22.2e-11229254126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ++++ C f+++tG CkyG+ C+F+H+
  Do000531.1 229 PGEVDCAFYMKTGSCKYGSICRFNHP 254
                 57899********************9 PP
4zf-CCCH27.45.8e-09303321826
                 GGGGTS--TTTTT-SS-SS CS
     zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                 f+++tG+Cky  +CkF+H+
  Do000531.1 303 FYMKTGFCKYSQKCKFHHP 321
                 9*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.14195123IPR000571Zinc finger, CCCH-type
SMARTSM003560.04295122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.258148176IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-7148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6148175IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10151175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-6153174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197228256IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5228255IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-9230254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5232255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4234253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.624295323IPR000571Zinc finger, CCCH-type
SMARTSM003563.4296322IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6302321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4303321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSGPLYPYSR GAGAFPDCDG APPPPPPRYS DFEVDLIAAR YAGDPPPYPS SPAVSAFDSR  60
VGAFDSHVGA FDSHVGARRS AEADVPNVED SYPERPGEPD CPYFGKTSKC KFKSKCKFNH  120
PKEMVNALEA GTDNEQSLIS DSAILPVRPS EPVCTFYAKT GKCKFGANCK FNHPKDIEIL  180
PMIAKETIYT ATTDAAAHIG AADGSVPAKT HAPNAPAEAH NAKGLPIRPG EVDCAFYMKT  240
GSCKYGSICR FNHPYWPVVD IALTAPLLQT TLPPPAPIAS AGMLYPASNI LQSFDFYAPH  300
VPFYMKTGFC KYSQKCKFHH PINRSTPGAN ENGDPQQPVT LTLAGLPRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000531.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969171.11e-167zinc finger CCCH domain-containing protein 8
SwissprotQ5ZDJ61e-103C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLK3XGE81e-166K3XGE8_SETIT; Uncharacterized protein
STRINGSi000968m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-52floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]