PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000506.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 1913aa MW: 211324 Da PI: 6.9987 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.9 | 1.3e-21 | 1255 | 1310 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++lgL+ rqVk+WFqNrR+++k Do000506.1 1255 KKRYHRHTPQQIQELEALFKECPHPDEKQRGELSRRLGLDPRQVKFWFQNRRTQMK 1310 678899***********************************************998 PP | |||||||
2 | START | 74.1 | 3.6e-24 | 1450 | 1547 | 94 | 206 |
EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189 m+aelq+lsplvp R+++f+R+++ql +g w++vdvSvd ++ ++ + +vtwveh++++++++h l+r+l++sgl Do000506.1 1450 MKAELQVLSPLVPiREVTFLRFCKQLAEGAWAVVDVSVDGLVRDQN----------------SATASNAGNVTWVEHTEYDEASVHHLYRPLLRSGL 1530 89************************************97655553................122233348************************** PP HHHHHHHHHHTXXXXXX CS START 190 aegaktwvatlqrqcek 206 a+ga++w+a lqrqce+ Do000506.1 1531 AFGARRWLAMLQRQCEC 1547 ***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 2.1E-5 | 4 | 67 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF56112 | 2.6E-45 | 35 | 212 | IPR011009 | Protein kinase-like domain |
PROSITE profile | PS50011 | 24.499 | 54 | 382 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 4.7E-12 | 54 | 300 | IPR000719 | Protein kinase domain |
Pfam | PF00069 | 6.8E-30 | 56 | 206 | IPR000719 | Protein kinase domain |
PROSITE pattern | PS00107 | 0 | 60 | 82 | IPR017441 | Protein kinase, ATP binding site |
Gene3D | G3DSA:3.30.200.20 | 2.0E-23 | 68 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.510.10 | 3.0E-20 | 117 | 205 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 176 | 188 | IPR008271 | Serine/threonine-protein kinase, active site |
SuperFamily | SSF52799 | 8.12E-5 | 288 | 401 | IPR029021 | Protein-tyrosine phosphatase-like |
SMART | SM01326 | 8.5E-42 | 412 | 551 | IPR014020 | Tensin phosphatase, C2 domain |
Pfam | PF10409 | 3.6E-28 | 414 | 550 | IPR014020 | Tensin phosphatase, C2 domain |
PROSITE profile | PS51182 | 27.802 | 414 | 552 | IPR014020 | Tensin phosphatase, C2 domain |
Gene3D | G3DSA:2.60.40.1110 | 1.7E-15 | 414 | 551 | No hit | No description |
SuperFamily | SSF49562 | 3.6E-21 | 416 | 551 | IPR000008 | C2 domain |
SMART | SM00498 | 1.6E-5 | 693 | 1163 | IPR015425 | Formin, FH2 domain |
Pfam | PF02181 | 7.4E-9 | 893 | 939 | IPR015425 | Formin, FH2 domain |
SuperFamily | SSF101447 | 1.28E-55 | 893 | 1122 | No hit | No description |
Pfam | PF02181 | 6.9E-47 | 938 | 1122 | IPR015425 | Formin, FH2 domain |
SuperFamily | SSF46689 | 5.85E-21 | 1237 | 1310 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 1240 | 1310 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.042 | 1252 | 1312 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-20 | 1253 | 1316 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.48E-19 | 1254 | 1310 | No hit | No description |
Pfam | PF00046 | 3.8E-19 | 1255 | 1310 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 1287 | 1310 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 1.17E-8 | 1448 | 1547 | No hit | No description |
Pfam | PF01852 | 2.7E-19 | 1450 | 1547 | IPR002913 | START domain |
PROSITE profile | PS50848 | 11.029 | 1490 | 1550 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.66E-21 | 1567 | 1775 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0051017 | Biological Process | actin filament bundle assembly | ||||
GO:0005819 | Cellular Component | spindle | ||||
GO:0009524 | Cellular Component | phragmoplast | ||||
GO:0009574 | Cellular Component | preprophase band | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008017 | Molecular Function | microtubule binding | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0051015 | Molecular Function | actin filament binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1913 aa Download sequence Send to blast |
LVTTFVVMVA TALYLSLKRR YNEAIHLKVE MFLKTYGMSK PTRYTFSEVK KIARRFKEKV 60 GQGGFGTVYK GHLPNGVPVA VKMLENSTEE GEEFINEVAT IGQIHHANIV RLLGFCSEGT 120 RRVLIYEFMP NESLERYVFL HDSNSQELLV PEKMLDIATG IARGTEDLHQ GCNQRILHFD 180 IKPHNILLDY SFNPKISDFG LAKLFITTFL HSHEMSLLSR FFYKRPPDGL LEFIERIYVF 240 DSCFSTEVLP QGMYPVYLNE ILTELHEEHI ESSFLAINFR DGDKRSQLAD ILREYNIPVI 300 DYPRHFEGCP VLPLSLIQHF LRVCEHWLSG GNNKNIILLH CERGTWPLLA FLLSCLLIYK 360 KLHGAEHKTL DIIYREAPKG FLQLFSALNP MPSQLRYMQY VARRNISPEW PPMERALSLD 420 CLILRAIPSF DSDNGCRPLV RIFGRNLLGK NGSMTNMIFS MPKKKSLRHY RQEDCDVIKI 480 DIQCLVQGDI VLECVHLDLD PEKEVMMFRI MFNTAFIRSN VLMLNSDDVD ILWGSKERYP 540 KNFRAEVLFC EIGGMSPTRA PTATLNGDMK GGLPIEAFSA VQELFNGVDW IESSDDAAYW 600 LLKEFSANSL QEKFQKLILN DMKELSKMQA KVGLQMPLMS PLDSDEEKYS VASDSVCSAE 660 HEKVQHGGNS SDSENIDRDL TTEDSESSAT LSINSSSPPQ QPQPPLPPHG LPSSLSASSV 720 LATGPTGPLT KPLQELPSNR LPFSPPAPPP LPPQSGRKPA SSQPPPPPPP SGSKHVFSSP 780 PPPPPPPPPP RISSAGPPQP PPPPPPLNGS KHILSPPPPP PRISSVAPLQ PPPPPPPPPP 840 PLPNSGAAKQ QNVCAAPPPP PPPPAHGITN KGXXXXXXXX XKDHLLHLHL HLSAILALDT 900 SVLDNDQVEN LIKFCPTKEE IEMLKGYNGN KEMLGKCEQV DDLRTNLTTI NDATKEVKES 960 LKLRQIMQTI LTLGNALNQG TARGSAVGFR LDSLLKLSDT RARNNKMTLM HYLCKVFTFR 1020 GSGGQGLLVC FKDFRKPMIQ LKLLAEEMQA INKGLEKVEQ ELAASENDGA ISIGFRKALK 1080 SFLDAAEAEV RSLISLYAEV GRNADSLAQY FGEDPARCPF EQGCLCECQD FGALCSPPDS 1140 VRGSGPSLFG RRERHGGGMS FGSLFDGGAG GGGGGMQFPF SAGFSSSPAL SLGLDNNAGM 1200 GGGRVLPGGA GTGGGMARDA DAENDSRSGS DHLDAMSGGG EDEDDAEPGN PRKRKKRYHR 1260 HTPQQIQELE ALFKECPHPD EKQRGELSRR LGLDPRQVKF WFQNRRTQMK VSRLLPISFF 1320 IYCPDFRPLF RFLTWFLVPV ISLAKTQLER HENALLKQEN DKLRAENMTI REAMRSPMCG 1380 SCGSPAMLGE VSLEEQHLCI ENARLKDELN RVYALATKFL GKPMSMLAGP MMQPHLSSLP 1440 MPSSSLELAM KAELQVLSPL VPIREVTFLR FCKQLAEGAW AVVDVSVDGL VRDQNSATAS 1500 NAGNVTWVEH TEYDEASVHH LYRPLLRSGL AFGARRWLAM LQRQCECLAI LMSPDTVSAN 1560 DSSVITQEGK RSMLKLARRM TENFCAGVSA SSAREWSKLD GATGSIGEDV RVMARKSVDE 1620 PGEPPGVVLS AATSVWVPVA PEKLFNFLRD EQLRAEWDIL SNGGPMQEMA NIAKGQEHGN 1680 SVSLLRASAM SANQSSMLIL QETCTDASGS MVVYAPVDIP AMQLVMNGGD STYVALLPSG 1740 FAILPDGPGT GNGHKTGGSL LTVAFQILVN SQPTAKLTVE SVETVNNLIS CTIKKIKTAL 1800 QCDATANFST ASIVILAFQY LWARCDYKNV QSGSTSDKLH IPQGKCYSRF EMKHPMPDNQ 1860 MNHKNIQNAI LIGWFSSEFA ARPKLDTEKV HVSKLLQCAD LKFSGFFFQQ HHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j5t_A | 9e-29 | 44 | 203 | 74 | 242 | Probable serine/threonine-protein kinase PBL2 |
6j5t_D | 9e-29 | 44 | 203 | 74 | 242 | Probable serine/threonine-protein kinase PBL2 |
6j5t_I | 9e-29 | 44 | 203 | 74 | 242 | Probable serine/threonine-protein kinase PBL2 |
6j5t_J | 9e-29 | 44 | 203 | 74 | 242 | Probable serine/threonine-protein kinase PBL2 |
6j5t_M | 9e-29 | 44 | 203 | 74 | 242 | Probable serine/threonine-protein kinase PBL2 |
6j5u_C | 9e-29 | 44 | 203 | 74 | 242 | Probable serine/threonine-protein kinase PBL2 |
6j5v_C | 9e-29 | 44 | 203 | 74 | 242 | Probable serine/threonine-protein kinase PBL2 |
6j6i_A | 9e-29 | 44 | 203 | 74 | 242 | Probable serine/threonine-protein kinase PBL2 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1250 | 1256 | PRKRKKR |
2 | 1251 | 1255 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000506.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063249 | 0.0 | BT063249.1 Zea mays full-length cDNA clone ZM_BFc0042P14 mRNA, complete cds. | |||
GenBank | BT064453 | 0.0 | BT064453.1 Zea mays full-length cDNA clone ZM_BFc0170E20 mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 1e-154 | homeodomain GLABROUS 1 |