PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000493.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRF | ||||||||
Protein Properties | Length: 385aa MW: 42156.8 Da PI: 8.3596 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78 | 9.3e-25 | 90 | 133 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e Do000493.1 90 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 133 79***************************************998 PP | |||||||
2 | QLQ | 58.1 | 2.7e-20 | 19 | 53 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yK+La+++P+P++L+ +++ Do000493.1 19 PFTASQWQELEHQALIYKCLASGKPIPSYLMPPLR 53 9******************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.1E-11 | 18 | 54 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.6E-14 | 19 | 51 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.814 | 19 | 54 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.573 | 90 | 134 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-20 | 91 | 133 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MMMMSGRAGG GAGAADRYPF TASQWQELEH QALIYKCLAS GKPIPSYLMP PLRRILDSAL 60 ATSPSLAFPP QPSLGWGCFG MGFSRKPDED PEPGRCRRTD GKKWRCSKEA YPDSKYCEKH 120 MHRGKNRSRK PVEMSLATPA PSSNATSATS ATAATATTTT SSPAPTYHRP APAAHDASPY 180 HALYGGSPYA ASARPAGAYH AAQVSPFHLH LDTTHPHPPP SYYSVDQRDY AYGHAAKEVG 240 EHAFFSDGTT ERDRQATGQW QFKNLGVEPK QQSATSLFSV GGYGNGAASA YAVDLTKDDD 300 EEERRRQQQQ QQQHCFVLGA DLRLERPSGH DAAPAQKPLR PFFDEWPHEK GNKGGSWMGF 360 DGETQLSMSI PMATNDFPIT SRHRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000269|PubMed:15295073}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000493.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA3) and submergence. {ECO:0000269|PubMed:10712532, ECO:0000269|PubMed:15295073}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954097.1 | 0.0 | growth-regulating factor 1 isoform X1 | ||||
Swissprot | A2XA73 | 1e-169 | GRF1_ORYSI; Growth-regulating factor 1 | ||||
TrEMBL | A0A1E5W4K9 | 0.0 | A0A1E5W4K9_9POAL; Growth-regulating factor 1 (Fragment) | ||||
STRING | Pavir.J03212.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-49 | growth-regulating factor 5 |