PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000479.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 632aa    MW: 70752.9 Da    PI: 7.6213
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000479.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.6e-09515562347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E  +lvd+v+q+G g W+ I +        Rt  ++k++w+++
       Do000479.1 515 AWTLSEVMKLVDGVAQYGAGKWSEIRKLSFssySYRTSVDLKDKWRNL 562
                      7************************9999999*99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.038508567IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-12510565IPR009057Homeodomain-like
SuperFamilySSF466895.31E-15510565IPR009057Homeodomain-like
SMARTSM007173.4E-9512565IPR001005SANT/Myb domain
CDDcd116602.17E-18514564No hitNo description
PfamPF002496.2E-6515562IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MITHSGGRTP EPCRAMITES FEKHFKFVQV EGDGTLVPAT EDDVLQFEHF FHDEKVDLPS  60
VEDVGHVEEF FSNECILLKK SDLEGGSSKL KTIELNTQKL GIDLESMQLK KMHIIAQENR  120
LQSLDDSLSP PLKCTVVHVQ QPDKFLTEQG DNNIAQQDNA STETTKSTVL NDSFSAEKDK  180
ADACSRPVDD TSTEPSVSGV NSSVPDFSIL RGEVCLDDLT IRELQEAFRA IFGRQTTVKD  240
KIWLKRRITM GLTNSCDVPS SGCVVKDYKI IGKDGKQEIS GEITKIGLQA TLVRDQVIYP  300
GNEGDSPSSS YYQSEDQQSS KRFKRVPLHN DEPQENHLAE QCTNKRTRKP TKRYIEELSD  360
IEAHDSTGNL SLPAKRTAHD EVLLKPRAAP FHELESLSTI YPTRKDTLGG FSVHVPYVSR  420
MRRGRPRKDF ISFVDKEPSV DHNGVQTAVG MMLAKEGEER NHVRKASEVP LMVNSERGRI  480
EAVDSKGVQN LQANVYNVAS KPKIKRGLTR KHHRAWTLSE VMKLVDGVAQ YGAGKWSEIR  540
KLSFSSYSYR TSVDLKDKWR NLIRATQTQL PAQKDGFCPR KTNPSIIPIP PSILLRVKEL  600
NELQSQGDAF TAPVKFNGQN SKIVQGKGSG FL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421427RRGRPRK
2421428RRGRPRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000479.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801371.10.0uncharacterized protein LOC112880841
RefseqXP_025801378.10.0uncharacterized protein LOC112880841
TrEMBLA0A1E5W4T20.0A0A1E5W4T2_9POAL; Uncharacterized protein
STRINGPavir.Aa00316.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-83TRF-like 6