PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000450.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 264aa    MW: 28305.9 Da    PI: 6.1436
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000450.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-182774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEdell++av++ G g+W+t +r+ g+ R++k+c++rw +yl
       Do000450.1 27 RGAWTPEEDELLARAVEREGEGQWRTLPRRAGLLRCGKSCRLRWMNYL 74
                     89******************************99************97 PP
2Myb_DNA-binding476.1e-1581125248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
       Do000450.1  81 GPIAADEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 125
                      566689***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.992274IPR017930Myb domain
SuperFamilySSF466895.87E-2924121IPR009057Homeodomain-like
SMARTSM007172.2E-132676IPR001005SANT/Myb domain
PfamPF002491.8E-162774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-212881IPR009057Homeodomain-like
CDDcd001671.45E-112974No hitNo description
PROSITE profilePS5129425.14875129IPR017930Myb domain
SMARTSM007175.4E-1479127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2582130IPR009057Homeodomain-like
PfamPF002491.7E-1384125IPR001005SANT/Myb domain
CDDcd001671.39E-1185125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MTRKPTAAAA RQQLGGGVAG ATRSLKRGAW TPEEDELLAR AVEREGEGQW RTLPRRAGLL  60
RCGKSCRLRW MNYLRPDIKR GPIAADEEDL ILRLHRLLGN RWSLIAGRLP GRTDNEIKNY  120
WNSHLSKKLI ARGIDPRTHT PLAAAAAPDK TPPLLPIVKP PVAAPPPPPE QPGSSSCTGV  180
GGDDGGGDFA TMMGLGVEGF EGFGDQFFTL DAAGRGAFDM GCTMGDDGTF SSFLDSLIID  240
ENQLADYFAD HKNADGGDND QAGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25251295108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1082591e-121AK108259.1 Oryza sativa Japonica Group cDNA clone:002-141-A12, full insert sequence.
GenBankD886201e-121D88620.1 Oryza sativa mRNA for OSMYB4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456198.21e-116transcription repressor MYB5
RefseqXP_008656780.11e-116transcription repressor MYB5
SwissprotQ388503e-71MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A1E5WDU80.0A0A1E5WDU8_9POAL; Transcription repressor MYB5
STRINGGRMZM2G395672_P011e-115(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-68myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]