PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000437.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | Dof | ||||||||
Protein Properties | Length: 187aa MW: 18733.5 Da PI: 8.1184 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 99.6 | 2e-31 | 40 | 84 | 3 | 47 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalr 47 +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lr Do000437.1 40 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLR 84 57899***************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-22 | 37 | 84 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.5E-28 | 42 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 22.853 | 43 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 45 | 81 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MAGAGGATAV QQPAAAGASG GARSGAGAGA AGAPVADPRA EALRCPRCDS ANTKFCYYNN 60 YSLSQPRHFC KACKRYWTRG GTLRXELHVK AEAGGAGDHQ QKAAPGEQQS GSWELPTPSS 120 SNVDANIIAS DALMAAAASM NPAVSSTSTA AITAPSSFMY WGNGGIGGAA AAWPDLTNCG 180 SSIATLF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000437.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582403 | 1e-118 | KC582403.1 Sorghum bicolor dof6 protein (dof6) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957815.1 | 1e-36 | dof zinc finger protein 2-like | ||||
TrEMBL | A0A0A9J3V1 | 1e-40 | A0A0A9J3V1_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A3L6E5G7 | 2e-40 | A0A3L6E5G7_MAIZE; Dof zinc finger protein DOF5.3 | ||||
STRING | Pavir.Bb02818.1.p | 1e-43 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8895 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 1e-25 | Dof family protein |