PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000425.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SBP
Protein Properties Length: 432aa    MW: 44027.5 Da    PI: 9.778
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000425.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP68.51.3e-2190137249
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                 Cqve+C+adl ea++yhrrhkvCe hska vvlv+gl+qrfCqqCsr 
  Do000425.1  90 CQVERCAADLHEARRYHRRHKVCEPHSKALVVLVAGLRQRFCQQCSRA 137
                 **********************************************95 PP

2SBP125.32.5e-39308385178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +Cq+e+C+adl++  +y+rrhkvCe+hskapvvlv+gl+qrfCqqCsrfhelsefDe +rsCr rLa+hnerrrk++a
  Do000425.1 308 RCQAERCNADLADEGQYNRRHKVCETHSKAPVVLVAGLRQRFCQQCSRFHELSEFDEMRRSCRLRLAGHNERRRKSSA 385
                 6**************************************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.8E-2285137IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.47887164IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.58E-2188137IPR004333Transcription factor, SBP-box
PfamPF031104.0E-1690137IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.6E-32303370IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.599306383IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.02E-36307388IPR004333Transcription factor, SBP-box
PfamPF031103.4E-30309382IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MASSLAGAAM DRKENPRRGS SSSAAAASMA TLAAAAAAGE GSSSGSADGA ALPPNGEDEK  60
KPSTLAAVSG SSSPVVAAVR RGEAGGGPSC QVERCAADLH EARRYHRRHK VCEPHSKALV  120
VLVAGLRQRF CQQCSRAVAC ATDQRGHRAA TPTSSSSSSL SPAPACVSDQ RRGSVATGLA  180
LPLSMGEGEE GASAFPSVLA SQQTQSSTAP ELQLHLPRRS SIASSLAGAA MDRKDKSRRG  240
SSGSAAASMA ALAAAAAAGD AADSGTVAPH REEDRKPAKL AAVGGESSTS PVPARRGAAA  300
AGGGGGPRCQ AERCNADLAD EGQYNRRHKV CETHSKAPVV LVAGLRQRFC QQCSRFHELS  360
EFDEMRRSCR LRLAGHNERR RKSSADAHGN SNSSSNGGGG GGSGGGDGCR HADQEGRGRQ  420
AGNQPPNHFQ IR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3184382284squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000425.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654457e-91BT065445.2 Zea mays full-length cDNA clone ZM_BFb0161D05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957796.15e-65squamosa promoter-binding-like protein 13
TrEMBLA0A3L6T7T33e-68A0A3L6T7T3_PANMI; Squamosa promoter-binding-like protein 13
STRINGSi031154m2e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.14e-34squamosa promoter binding protein-like 3