PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000425.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | SBP | ||||||||
Protein Properties | Length: 432aa MW: 44027.5 Da PI: 9.778 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 68.5 | 1.3e-21 | 90 | 137 | 2 | 49 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 Cqve+C+adl ea++yhrrhkvCe hska vvlv+gl+qrfCqqCsr Do000425.1 90 CQVERCAADLHEARRYHRRHKVCEPHSKALVVLVAGLRQRFCQQCSRA 137 **********************************************95 PP | |||||||
2 | SBP | 125.3 | 2.5e-39 | 308 | 385 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adl++ +y+rrhkvCe+hskapvvlv+gl+qrfCqqCsrfhelsefDe +rsCr rLa+hnerrrk++a Do000425.1 308 RCQAERCNADLADEGQYNRRHKVCETHSKAPVVLVAGLRQRFCQQCSRFHELSEFDEMRRSCRLRLAGHNERRRKSSA 385 6**************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.8E-22 | 85 | 137 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 18.478 | 87 | 164 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.58E-21 | 88 | 137 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.0E-16 | 90 | 137 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 2.6E-32 | 303 | 370 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.599 | 306 | 383 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.02E-36 | 307 | 388 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.4E-30 | 309 | 382 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MASSLAGAAM DRKENPRRGS SSSAAAASMA TLAAAAAAGE GSSSGSADGA ALPPNGEDEK 60 KPSTLAAVSG SSSPVVAAVR RGEAGGGPSC QVERCAADLH EARRYHRRHK VCEPHSKALV 120 VLVAGLRQRF CQQCSRAVAC ATDQRGHRAA TPTSSSSSSL SPAPACVSDQ RRGSVATGLA 180 LPLSMGEGEE GASAFPSVLA SQQTQSSTAP ELQLHLPRRS SIASSLAGAA MDRKDKSRRG 240 SSGSAAASMA ALAAAAAAGD AADSGTVAPH REEDRKPAKL AAVGGESSTS PVPARRGAAA 300 AGGGGGPRCQ AERCNADLAD EGQYNRRHKV CETHSKAPVV LVAGLRQRFC QQCSRFHELS 360 EFDEMRRSCR LRLAGHNERR RKSSADAHGN SNSSSNGGGG GGSGGGDGCR HADQEGRGRQ 420 AGNQPPNHFQ IR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-31 | 84 | 382 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000425.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065445 | 7e-91 | BT065445.2 Zea mays full-length cDNA clone ZM_BFb0161D05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957796.1 | 5e-65 | squamosa promoter-binding-like protein 13 | ||||
TrEMBL | A0A3L6T7T3 | 3e-68 | A0A3L6T7T3_PANMI; Squamosa promoter-binding-like protein 13 | ||||
STRING | Si031154m | 2e-64 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 4e-34 | squamosa promoter binding protein-like 3 |