PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000409.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LSD | ||||||||
Protein Properties | Length: 170aa MW: 17843.4 Da PI: 8.4486 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 22.5 | 1.9e-07 | 14 | 37 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC+++L+Y rGA+ V+C+ C+t Do000409.1 14 CSGCKCVLQYRRGATGVCCPGCNT 37 ***********************9 PP | |||||||
2 | zf-LSD1 | 23.2 | 1.2e-07 | 54 | 75 | 1 | 22 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalC 22 CggC t+L Y rGA ++RC+ C Do000409.1 54 CGGCFTMLVYNRGAANIRCPHC 75 *********************9 PP | |||||||
3 | zf-LSD1 | 25 | 3.2e-08 | 95 | 119 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP GA+ V C+ C V Do000409.1 95 CGHCRTTLAYPSGASTVGCPTCRCV 119 **********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.4E-6 | 11 | 39 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.4E-5 | 14 | 37 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.1E-8 | 52 | 75 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.1E-9 | 54 | 76 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.3E-7 | 92 | 121 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-7 | 95 | 119 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MSSISEGMQD QLICSGCKCV LQYRRGATGV CCPGCNTFTA ANPSSRPEMS ELVCGGCFTM 60 LVYNRGAANI RCPHCGRKVS APDCEAANQI GHLSCGHCRT TLAYPSGAST VGCPTCRCVN 120 PVRNNNSGGS ARPAPSDARP QTVLVENPKT LDEKGKLVSN VAVGVTSWKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000409.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819949.1 | 1e-101 | protein LOL4-like isoform X1 | ||||
Refseq | XP_025819950.1 | 1e-101 | protein LOL4-like isoform X1 | ||||
Swissprot | Q84UR0 | 3e-71 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | A0A1E5WMK8 | 1e-116 | A0A1E5WMK8_9POAL; Protein LOL4 (Fragment) | ||||
STRING | Si014280m | 1e-100 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-39 | LSD family protein |
Publications ? help Back to Top | |||
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