PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000409.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LSD
Protein Properties Length: 170aa    MW: 17843.4 Da    PI: 8.4486
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000409.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD122.51.9e-071437124
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                C+gC+++L+Y rGA+ V+C+ C+t
  Do000409.1 14 CSGCKCVLQYRRGATGVCCPGCNT 37
                ***********************9 PP

2zf-LSD123.21.2e-075475122
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalC 22
                CggC t+L Y rGA ++RC+ C
  Do000409.1 54 CGGCFTMLVYNRGAANIRCPHC 75
                *********************9 PP

3zf-LSD1253.2e-0895119125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 Cg+Crt+L+YP GA+ V C+ C  V
  Do000409.1  95 CGHCRTTLAYPSGASTVGCPTCRCV 119
                 **********************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.4E-61139IPR005735Zinc finger, LSD1-type
PfamPF069433.4E-51437IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-85275IPR005735Zinc finger, LSD1-type
PfamPF069436.1E-95476IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.3E-792121IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-795119IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSSISEGMQD QLICSGCKCV LQYRRGATGV CCPGCNTFTA ANPSSRPEMS ELVCGGCFTM  60
LVYNRGAANI RCPHCGRKVS APDCEAANQI GHLSCGHCRT TLAYPSGAST VGCPTCRCVN  120
PVRNNNSGGS ARPAPSDARP QTVLVENPKT LDEKGKLVSN VAVGVTSWKR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819949.11e-101protein LOL4-like isoform X1
RefseqXP_025819950.11e-101protein LOL4-like isoform X1
SwissprotQ84UR03e-71LOL4_ORYSJ; Protein LOL4
TrEMBLA0A1E5WMK81e-116A0A1E5WMK8_9POAL; Protein LOL4 (Fragment)
STRINGSi014280m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.73e-39LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]