PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000288.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 447aa    MW: 48749 Da    PI: 6.6833
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000288.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.6e-07209230223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C++Cgk F+r  nL+ H+r H
  Do000288.1 209 FCSICGKGFKRDANLRMHMRGH 230
                 6*******************98 PP
2zf-C2H211.20.0012327341620
                 TTEEESSHHHHHHHH CS
     zf-C2H2   6 CgksFsrksnLkrHi 20 
                 Cg+sFsrk+ L  H 
  Do000288.1 327 CGTSFSRKDKLFAHV 341
                 **************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-5206233No hitNo description
PROSITE profilePS5015712.092208235IPR007087Zinc finger, C2H2
SMARTSM003550.0023208230IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-6209259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
SMARTSM0035571257290IPR015880Zinc finger, C2H2-like
SMARTSM0035537295317IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGIQQPFAPL AAPFGATPST NIPHMDWNPA TMLDNLTFIE DKIRQVKDVI RTMVDNGGQL  60
LCRPGELAQQ QQVVNADLTC LIVQLISTAG SLLPSLKNSS FLSHPSAGHM DIINHVGSSS  120
SFIPNVKNIS EENKEEMCSP QDYEELFKGF TDGAMEGGIE IDNVLVEEQD AKDGDEGGDA  180
GMDGESLPLG SYELLQLEKD EILAPHTHFC SICGKGFKRD ANLRMHMRGH GDEYKSPAAL  240
AKPPRDASAE HELVKRYSCP FVGCKRNKLH KNFQPLKTIL CVKNHYKRSH CEKSYTCSRC  300
HTKKFSVMAD LKTHEKHCGR DKWLCSCGTS FSRKDKLFAH VALFQGHTPA LPPEEAKTSS  360
GQIGPVGSHQ EPAKFPSSMG SNFMWGTSSG NDNTLDIKGF DGCSDDFMST ANFGSFNFSF  420
GPADGFAGEP SGGSFSMLAG AQKKGKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000288.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977257.10.0zinc finger protein STAR3
SwissprotQ943I61e-146STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A1E5VVV10.0A0A1E5VVV1_9POAL; Zinc finger protein STOP1-like protein
STRINGSi010000m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-133C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]