PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000258.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 33769.4 Da PI: 6.2333 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.2e-17 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd ll+ +v+ +G g+W+ a g++Rt+k+c++rw++yl Do000258.1 31 RGPWTEEEDALLAGYVAAHGEGRWNELALSAGLRRTGKSCRLRWLNYL 78 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.7e-15 | 84 | 127 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+ E++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++ Do000258.1 84 RGGFTPREQLLILDLHSRWGNR-WSKIAAQLP-GRTDNEVKNYWRT 127 788*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.995 | 26 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-30 | 29 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-13 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-16 | 31 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-21 | 32 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.72E-10 | 33 | 78 | No hit | No description |
SMART | SM00717 | 1.7E-13 | 83 | 131 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.58 | 83 | 133 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.6E-14 | 84 | 127 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 86 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.25E-10 | 87 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MDALWMSPCG SLLPSSAVGE DEATAAAELR RGPWTEEEDA LLAGYVAAHG EGRWNELALS 60 AGLRRTGKSC RLRWLNYLRP GVRRGGFTPR EQLLILDLHS RWGNRWSKIA AQLPGRTDNE 120 VKNYWRTRVQ KHAKQLGCDV GSARFHDVVR NLWMPRLLER IHADESAAAA AAAAASADVS 180 HCYSASPVHA PSSQPAYQYH NAAAPIISNC ARAPSPDAAS CVTGSSSSSW EASPAAQFQS 240 SSPTRAAWSN DKCQNGCSSA ASCDMFDESW SELLARANHD DADSAGLPDF GLGETGDNWW 300 SLEDILKQPL Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-24 | 28 | 131 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000258.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU952438 | 1e-153 | EU952438.1 Zea mays clone 1280407 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817284.1 | 0.0 | transcription factor JAMYB-like | ||||
Swissprot | Q2QZJ8 | 9e-77 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A1E5UQ70 | 0.0 | A0A1E5UQ70_9POAL; Transcription factor MYB108 | ||||
STRING | Si002446m | 1e-169 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 1e-71 | myb domain protein 112 |
Publications ? help Back to Top | |||
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