PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000258.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 311aa    MW: 33769.4 Da    PI: 6.2333
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000258.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.2e-173178148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd ll+ +v+ +G g+W+  a   g++Rt+k+c++rw++yl
       Do000258.1 31 RGPWTEEEDALLAGYVAAHGEGRWNELALSAGLRRTGKSCRLRWLNYL 78
                     89********************************************97 PP

2Myb_DNA-binding48.71.7e-1584127146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ E++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++
       Do000258.1  84 RGGFTPREQLLILDLHSRWGNR-WSKIAAQLP-GRTDNEVKNYWRT 127
                      788*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.9952682IPR017930Myb domain
SuperFamilySSF466895.24E-3029125IPR009057Homeodomain-like
SMARTSM007172.0E-133080IPR001005SANT/Myb domain
PfamPF002495.8E-163178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-213285IPR009057Homeodomain-like
CDDcd001671.72E-103378No hitNo description
SMARTSM007171.7E-1383131IPR001005SANT/Myb domain
PROSITE profilePS5129416.5883133IPR017930Myb domain
PfamPF002493.6E-1484127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2286132IPR009057Homeodomain-like
CDDcd001671.25E-1087127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDALWMSPCG SLLPSSAVGE DEATAAAELR RGPWTEEEDA LLAGYVAAHG EGRWNELALS  60
AGLRRTGKSC RLRWLNYLRP GVRRGGFTPR EQLLILDLHS RWGNRWSKIA AQLPGRTDNE  120
VKNYWRTRVQ KHAKQLGCDV GSARFHDVVR NLWMPRLLER IHADESAAAA AAAAASADVS  180
HCYSASPVHA PSSQPAYQYH NAAAPIISNC ARAPSPDAAS CVTGSSSSSW EASPAAQFQS  240
SSPTRAAWSN DKCQNGCSSA ASCDMFDESW SELLARANHD DADSAGLPDF GLGETGDNWW  300
SLEDILKQPL Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-242813124126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000258.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9524381e-153EU952438.1 Zea mays clone 1280407 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817284.10.0transcription factor JAMYB-like
SwissprotQ2QZJ89e-77JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A1E5UQ700.0A0A1E5UQ70_9POAL; Transcription factor MYB108
STRINGSi002446m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-71myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]