PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000214.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 304aa    MW: 32905.1 Da    PI: 6.7907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000214.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-08124169455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  h +rEr RR+r+ ++f+ L  llP+ +        sK +i+  A  YI++L+
  Do000214.1 124 RHIMRERLRRERLSQGFADLHALLPPgS-------SSKNDIVGAAAGYIRELE 169
                 599***********************66.......69999**********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-12115182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9119187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.401120168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-6124169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-5126174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MADPFFYFGH DDQDGAAVDD EDYLMSLGLI LSPAPVALPG SAFEAYQRRA PTLLESSLMT  60
GHGQCDSGGG ANVHRRMFSY LRRIVHHDAA VSAGAVAAGM MHAAPEEEAN LASSSQAPRS  120
SRFRHIMRER LRRERLSQGF ADLHALLPPG SSSKNDIVGA AAGYIRELEG RKGWLRARNQ  180
ELLERAASRW RGGTRNAGGG DMVVKVRAES EDHATAVDVF EAVLRRLKAM EELRVTAIRS  240
CFCAAGMWMD VGVEGQVSTR EVDKAITNAL TELAGNELGN GKQDPRSSSK PSFSCQVESG  300
VPMC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000214.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701619.11e-139transcription factor BHLH148
TrEMBLA0A1E5VF490.0A0A1E5VF49_9POAL; Uncharacterized protein
STRINGSi002320m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432