PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000184.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 283aa    MW: 30518.1 Da    PI: 6.5326
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000184.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.9e-1195151155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++GV++ k++g+++A+++d  s+  g krk  + g++ t+e+Aa+a++ a++k++g
  Do000184.1  95 SRFHGVTRLKWSGKYEAHLWDnTSQvEGrKRKGKH-GSYVTEEQAARAHDLAALKYWG 151
                 789******************55558777778888.999999*************987 PP
2AP239.31.7e-12196242955
         AP2   9 dkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++k+g+W A+I    e +    k ++lg+f t+eeAa+a++ a+ +l+g
  Do000184.1 196 RRKDGKWQARIGRIGEsR--DtKDIYLGTFETEEEAAEAYDIAAIELRG 242
                 5679******99953323..36*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.00E-1195163No hitNo description
SuperFamilySSF541713.33E-1195162IPR016177DNA-binding domain
PfamPF008477.7E-895151IPR001471AP2/ERF domain
PROSITE profilePS5103215.38296161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-1096161IPR001471AP2/ERF domain
SMARTSM003805.3E-1396167IPR001471AP2/ERF domain
PRINTSPR003679.3E-597108IPR001471AP2/ERF domain
PROSITE profilePS5103217.306184250IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-16195250IPR001471AP2/ERF domain
PfamPF008471.2E-7196242IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-14196252IPR016177DNA-binding domain
SMARTSM003801.7E-19196256IPR001471AP2/ERF domain
PRINTSPR003679.3E-5232252IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MATVQPQSPA GPTPPPPQEE RHDDAPDPPA ASSGEPPAAA GPGAGGGEIA ALDKQLAVGG  60
GGEERKPDGG ASAAAGGGGK LVAEAMRKYA SPRSSRFHGV TRLKWSGKYE AHLWDNTSQV  120
EGRKRKGKHG SYVTEEQAAR AHDLAALKYW GIGPNTKLNF NISDYEKEIE IMKTMSQDEF  180
VAYIRRSVAK QLFLKRRKDG KWQARIGRIG ESRDTKDIYL GTFETEEEAA EAYDIAAIEL  240
RGVHAVTNFD ISNYCEDGLR KLEGPSEVAK LEGPSEVMKL AGQ
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000184.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977550.11e-160AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z023e-56CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1E5W3430.0A0A1E5W343_9POAL; AP2-like ethylene-responsive transcription factor AIL1
STRINGSi010747m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-46AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]