PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRF | ||||||||
Protein Properties | Length: 197aa MW: 21372.3 Da PI: 10.3049 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.7 | 2.8e-25 | 66 | 110 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ Do000082.1 66 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 110 79****************************************996 PP | |||||||
2 | QLQ | 62.7 | 9.5e-22 | 11 | 46 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ ++L++Q+l+yKyL+a++PvPp+Ll++i++ Do000082.1 11 PFTAAQYEELEHQALIYKYLVAGVPVPPDLLLPIRR 46 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.6E-12 | 10 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.269 | 11 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.7E-15 | 11 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.517 | 66 | 110 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.4E-21 | 67 | 109 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MSGRWAARPA PFTAAQYEEL EHQALIYKYL VAGVPVPPDL LLPIRRGFVY HQPALGYGPY 60 FGKKVDPEPG RCRRTDGKKW RCSKEAAPDS KYCERHMHRG RNRSRKPVEA QLVAPLPHAQ 120 QQQQPPATAA GFQNHSLYPA VLTGNGGRAG GGGGGGMFGL GSTAQLQMDS AAAYATAAGG 180 GSKDLRTRFH PEKMTLF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 153 | GGRAGGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000082.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF515844 | 0.0 | EF515844.1 Zea mays putative growth-regulating factor 5 (GRF5) mRNA, complete cds. | |||
GenBank | EU962787 | 0.0 | EU962787.1 Zea mays clone 245531 growth-regulating factor mRNA, complete cds. | |||
GenBank | KJ727858 | 0.0 | KJ727858.1 Zea mays clone pUT5949 GRF transcription factor (GRF5) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976689.1 | 4e-97 | growth-regulating factor 3 | ||||
Swissprot | Q6AWY6 | 2e-82 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | A0A1E5W646 | 1e-142 | A0A1E5W646_9POAL; Growth-regulating factor 3 (Fragment) | ||||
STRING | Si011853m | 1e-93 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-47 | growth-regulating factor 5 |