PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV58802.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 1202aa MW: 134077 Da PI: 8.3139

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV58802.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.9e-05	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H KZV58802.1 73 FVCEICNKGFQRDQNLQLHRRGH 95 89******************988 PP
2	zf-C2H2	11.1	0.0012	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + KZV58802.1 149 WKCEKCSKRYAVQSDWKAHSKIC 171 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.34E-6	72	95	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.5E-5	72	95	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	73	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	73	95	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	114	144	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.5E-4	137	170	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.34E-6	144	169	No hit	No description
SMART	SM00355	130	149	169	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.20.20.80	2.6E-110	566	905	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	1.95E-91	572	904	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01301	2.0E-112	577	902	IPR031330	Glycoside hydrolase 35, catalytic domain
PRINTS	PR00742	1.1E-42	580	597	IPR001944	Glycoside hydrolase, family 35
PRINTS	PR00742	1.1E-42	601	619	IPR001944	Glycoside hydrolase, family 35
PRINTS	PR00742	1.1E-42	656	675	IPR001944	Glycoside hydrolase, family 35
PRINTS	PR00742	1.1E-42	712	727	IPR001944	Glycoside hydrolase, family 35
PROSITE pattern	PS01182	0	714	726	IPR019801	Glycoside hydrolase, family 35, conserved site
PRINTS	PR00742	1.1E-42	805	820	IPR001944	Glycoside hydrolase, family 35
PRINTS	PR00742	1.1E-42	870	886	IPR001944	Glycoside hydrolase, family 35
SuperFamily	SSF49785	1.05E-31	1030	1071	IPR008979	Galactose-binding domain-like
Gene3D	G3DSA:2.60.120.260	8.6E-32	1033	1185	IPR008979	Galactose-binding domain-like
SuperFamily	SSF49785	1.05E-31	1108	1184	IPR008979	Galactose-binding domain-like
Pfam	PF13364	2.6E-5	1110	1173	IPR025300	Beta-galactosidase jelly roll domain
PRINTS	PR00742	1.1E-42	1133	1149	IPR001944	Glycoside hydrolase, family 35

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0003676	Molecular Function	nucleic acid binding
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1202 aa Download sequence Send to blast
MSNLTTASGE ASVSSSNRND NGGMYNSLYN FPPTNQPQPQ PTIKKKRNQP GHPDPDAEVI 60 ALSPRTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKEIR KKVYVCPESS 120 CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CEKCSKRYAV QSDWKAHSKI CGTKEYRCDC 180 GTIFSRRDSF ITHRAFCDAL AEENARNSTI PFQSGVGASS HHINLQQIKS QQLPFPIKKE 240 QQNFSLRPPE IPPWLSCTSF LGPQPIDLTS PSSLFQDFQH NQDDDQNPNP NPSNATLGHA 300 SLPPYHHHPP SPHLSATALL QKAAQMGAKG ISNQCASPAG VFIRPHQTHM SAGTGDCGQN 360 ITAGFGLNLS SRDEFINGLT SSGNKAAAMT GGVASTGPGA SGDDTSNNNV INIDNINNNN 420 NNNDPLSSSS SSFLHEMIMN NPGHPLSSST GFDGSSFDED MNAFGGILNH SVAAKKLNED 480 GLTRDFLGLR PLSRTEILSF AGCINAGATL KTVTLNVHHI LGNMARKRSL RRITLKILVF 540 LISLLVFGAF APLPSLSQQS DLVKEKERKF AIADDMFWRD GEPFRIIGGD LHYFRVHPQY 600 WEDRLLRAKA LGLNTIQTYV PWNLHEPRQE HLVFDGIADI VSFLKLCKKL DLLVMLRAGP 660 YICGEWDLGG FPAWLLSKEP EIKLRSSDAT FLRLVEKWWS ILLPKVSPLL YSNGGPVIMY 720 QIENEFGSYG DDRAYLHYLV KLARRLLGDD VILYTTDGGS RETLEKGTIR GDAVFSAVDF 780 TTGDDPWPIF KLQKEFNAPG RSPPLSAEFY TGWLTHWGEN IASTDATQTA TYLEKILSKN 840 GSAVLYMAHG GTNFGFYSGA NTGANESDYK PDLTSYDYDA PIRESGDVDN KKYKALRKVI 900 AKYTSKPLIS VPSDNEKTAY GRIKLDKISF LYDMIDYKNL VGAVESEIPK SMEAIGQMFG 960 LVLYASEYTP NDYRNVLFIP KVHDRAQVFV SCADDSARRP SYVGTITRWS NTTIDLPYVK 1020 CQSKIKLLIL VENMGRLNYG PYIFDRKGIL SSVYVNSRAL YKWKMISIPL QNLNEGQRIN 1080 PITRNAEMEF LEKSDINNLE DKEKLDIEPA FYTGHFNIDK VTDTFLSFKG WNKGVAFVND 1140 FNVGRFWPSV GPQCTLYIPA PILREGENIL VILELESPNT DLFVKSVKQP DFTCGPATSK 1200 VG

Sequence ? help Back to Top

Protein Sequence Length: 1202 aa Download sequence Send to blast

MSNLTTASGE ASVSSSNRND NGGMYNSLYN FPPTNQPQPQ PTIKKKRNQP GHPDPDAEVI  60
ALSPRTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKEIR KKVYVCPESS  120
CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CEKCSKRYAV QSDWKAHSKI CGTKEYRCDC  180
GTIFSRRDSF ITHRAFCDAL AEENARNSTI PFQSGVGASS HHINLQQIKS QQLPFPIKKE  240
QQNFSLRPPE IPPWLSCTSF LGPQPIDLTS PSSLFQDFQH NQDDDQNPNP NPSNATLGHA  300
SLPPYHHHPP SPHLSATALL QKAAQMGAKG ISNQCASPAG VFIRPHQTHM SAGTGDCGQN  360
ITAGFGLNLS SRDEFINGLT SSGNKAAAMT GGVASTGPGA SGDDTSNNNV INIDNINNNN  420
NNNDPLSSSS SSFLHEMIMN NPGHPLSSST GFDGSSFDED MNAFGGILNH SVAAKKLNED  480
GLTRDFLGLR PLSRTEILSF AGCINAGATL KTVTLNVHHI LGNMARKRSL RRITLKILVF  540
LISLLVFGAF APLPSLSQQS DLVKEKERKF AIADDMFWRD GEPFRIIGGD LHYFRVHPQY  600
WEDRLLRAKA LGLNTIQTYV PWNLHEPRQE HLVFDGIADI VSFLKLCKKL DLLVMLRAGP  660
YICGEWDLGG FPAWLLSKEP EIKLRSSDAT FLRLVEKWWS ILLPKVSPLL YSNGGPVIMY  720
QIENEFGSYG DDRAYLHYLV KLARRLLGDD VILYTTDGGS RETLEKGTIR GDAVFSAVDF  780
TTGDDPWPIF KLQKEFNAPG RSPPLSAEFY TGWLTHWGEN IASTDATQTA TYLEKILSKN  840
GSAVLYMAHG GTNFGFYSGA NTGANESDYK PDLTSYDYDA PIRESGDVDN KKYKALRKVI  900
AKYTSKPLIS VPSDNEKTAY GRIKLDKISF LYDMIDYKNL VGAVESEIPK SMEAIGQMFG  960
LVLYASEYTP NDYRNVLFIP KVHDRAQVFV SCADDSARRP SYVGTITRWS NTTIDLPYVK  1020
CQSKIKLLIL VENMGRLNYG PYIFDRKGIL SSVYVNSRAL YKWKMISIPL QNLNEGQRIN  1080
PITRNAEMEF LEKSDINNLE DKEKLDIEPA FYTGHFNIDK VTDTFLSFKG WNKGVAFVND  1140
FNVGRFWPSV GPQCTLYIPA PILREGENIL VILELESPNT DLFVKSVKQP DFTCGPATSK  1200
VG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4mad_A	1e-150	574	1175	21	578	Beta-galactosidase
4mad_B	1e-150	574	1175	21	578	Beta-galactosidase
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	111	KLKQRTNKEIRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV58802.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072527.1	0.0	beta-galactosidase 17 isoform X1
Swissprot	Q93Z24	0.0	BGA17_ARATH; Beta-galactosidase 17
TrEMBL	A0A2Z7DHU7	0.0	A0A2Z7DHU7_9LAMI; Beta-galactosidase
STRING	Migut.I01031.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6522	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-110	indeterminate(ID)-domain 2

Publications ? help Back to Top
Iglesias N, et al. Apoplastic glycosidases active against xyloglucan oligosaccharides of Arabidopsis thaliana. Plant Cell Physiol., 2006. 47(1): p. 55-63 [PMID:16267099] Ahn YO, et al. Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35. Phytochemistry, 2007. 68(11): p. 1510-20 [PMID:17466346] Chandrasekar B,van der Hoorn RA Beta galactosidases in Arabidopsis and tomato - a mini review. Biochem. Soc. Trans., 2016. 44(1): p. 150-8 [PMID:26862200]