PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV58763.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 287aa    MW: 32693.4 Da    PI: 6.2876
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV58763.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-1778130456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 + +++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  KZV58763.1  78 KKRLNMEQVKTLEKNFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 130
                 556899**********************************************9 PP
2HD-ZIP_I/II1291.9e-4176166191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekk+rl+ eqvk+LE++Fe  +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr++da+k+en++L+ ++++L++e+
   KZV58763.1  76 EKKKRLNMEQVKTLEKNFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEILKRQFDAVKSENDALQVQNQKLHAEI 166
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-1969134IPR009057Homeodomain-like
PROSITE profilePS5007116.92572132IPR001356Homeobox domain
SMARTSM003891.3E-1675136IPR001356Homeobox domain
CDDcd000862.21E-1577133No hitNo description
PfamPF000465.8E-1577130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-1879139IPR009057Homeodomain-like
PRINTSPR000311.6E-5103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5112128IPR000047Helix-turn-helix motif
PfamPF021834.8E-16132172IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MLQTPHEDHH DHDQPSTSLA VPILPSCSPQ EFHGGVASLL GKRSSMSFAT GIDICDEINN  60
HGDQDELSDD GSQLGEKKKR LNMEQVKTLE KNFELGNKLE PERKLQLARA LGLQPRQIAI  120
WFQNRRARWK TKQLEKDYEI LKRQFDAVKS ENDALQVQNQ KLHAEILSLK TREPTESINL  180
NKETEGSCSN RSENSSEIKL DISRNPAIDS PILPTNPTTT SRQFFPSSLR PNGISHLFQN  240
STSSRPENQC PKVDHHQNVK DEGLCNMFCG MDDQTGFWPW LEQQHFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV58763.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071017.11e-161homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-110ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2Z7DH680.0A0A2Z7DH68_9LAMI; Homeobox-leucine zipper protein ATHB-13
STRINGVIT_01s0026g01950.t011e-149(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-112HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]