PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV58247.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NAC

Protein Properties

Length: 372aa MW: 42340.2 Da PI: 7.2745

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV58247.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.4	3.4e-50	24	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ + + KZV58247.1 24 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENLRSI 121 79*************************.89***********8778899***************************************** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkktLvfy+g+apkg +t+W+m+eyrl KZV58247.1 122 GLKKTLVFYSGKAPKGIRTSWIMNEYRL 149 ************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-56	23	169	IPR003441	NAC domain
PROSITE profile	PS51005	55.948	23	170	IPR003441	NAC domain
Pfam	PF02365	3.5E-25	25	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MNNNQDDEGV NKQEDDQHQH DMVMPGFRFH PTEEELVEFY LRRKVEGKRF NVELITFLDL 60 YRYDPWELPA LAAIGEKEWY FYVPRDRKYR NGDRPNRVTT SGYWKATGAD RMIRSENLRS 120 IGLKKTLVFY SGKAPKGIRT SWIMNEYRLP HHETERLQKA EISLCRVYKR AGVEDHPSLP 180 RSLSTKASSS SSSRGSQSTQ KPHETINLGI ETIQTEGIMS ESSPSSSTNV GTSLALSNPN 240 SYNLNPLLHM ASTVDPAAPS SVERDRMILL HNNSQQICTT IFANSSSSHA LDDLHKLVNN 300 YSINQENHHF ANNIIVPSLL SHFSTLQPPP QPQQQLALNV VPGSIQAAYP DRLWDWNSIS 360 DQASKDFNSH FK

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MNNNQDDEGV NKQEDDQHQH DMVMPGFRFH PTEEELVEFY LRRKVEGKRF NVELITFLDL  60
YRYDPWELPA LAAIGEKEWY FYVPRDRKYR NGDRPNRVTT SGYWKATGAD RMIRSENLRS  120
IGLKKTLVFY SGKAPKGIRT SWIMNEYRLP HHETERLQKA EISLCRVYKR AGVEDHPSLP  180
RSLSTKASSS SSSRGSQSTQ KPHETINLGI ETIQTEGIMS ESSPSSSTNV GTSLALSNPN  240
SYNLNPLLHM ASTVDPAAPS SVERDRMILL HNNSQQICTT IFANSSSSHA LDDLHKLVNN  300
YSINQENHHF ANNIIVPSLL SHFSTLQPPP QPQQQLALNV VPGSIQAAYP DRLWDWNSIS  360
DQASKDFNSH FK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	13	170	7	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	13	170	7	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	13	170	7	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	13	170	7	165	NO APICAL MERISTEM PROTEIN
4dul_A	1e-56	13	170	7	165	NAC domain-containing protein 19
4dul_B	1e-56	13	170	7	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV58247.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022897039.1	1e-178	NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	1e-117	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2Z7DE51	0.0	A0A2Z7DE51_9LAMI; Protein FEZ
STRING	cassava4.1_009166m	1e-150	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-110	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]