PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV57745.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 23516.8 Da PI: 8.2198 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97 | 1.9e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA r+ +Pv+Gavg++++++++++q+++e+ KZV57745.1 2 SCNGCRVLRKGCSETCVLRPCLqwiesAEAQGHATVFVAKFFGRAGLMSFISNVPENQRPALFQSLLFEAAGRTVNPVNGAVGLLWTGNWHVCQAAVET 100 6*********************9999777889****************************************************************999 PP DUF260 95 all 97 +l+ KZV57745.1 101 VLR 103 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.618 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCVLR PCLQWIESAE AQGHATVFVA KFFGRAGLMS FISNVPENQR 60 PALFQSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALKPI QQFLGDDASD 120 PDASSGCLNM FTLQDPGLVS RSKVHKRRRF PDDPAKIKQL SDLDLSLSAD HFQGKKTNPL 180 PEKRRLGSPS LNSEESMTTT CGDQPANDAK LLNLFN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV57745.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099355.1 | 1e-124 | LOB domain-containing protein 37-like | ||||
Swissprot | Q9FN11 | 4e-77 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A2Z7DEJ6 | 1e-158 | A0A2Z7DEJ6_9LAMI; LOB domain-containing protein 37 | ||||
STRING | XP_009801229.1 | 1e-104 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 6e-74 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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