PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV57704.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NAC
Protein Properties Length: 1221aa    MW: 137937 Da    PI: 7.8039
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV57704.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.75.3e-283905281128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atk...sgyWkatg 87 
                 lp+G++F+P+d el+ e+L++k+        + ++e+i++++    i++++P++Lp  +k++ ++ yfF ++ ++ya+gkrk+r +++   + +W++tg
  KZV57704.1 390 LPAGVKFDPSDVELL-EHLAAKCGVGVskphMFIDEFIPTLEgdegICYTHPENLP-GAKKDGSNAYFFYRTINAYASGKRKRRrIIHasgRVRWHKTG 486
                 799************.999999765554445333444555423345**********.556778899****************995433322556***** PP

         NAM  88 kdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 ++k+v++ +  l+g kk++v+y  +++ +k+ k++W+mh+y++
  KZV57704.1 487 RTKAVIE-NVVLKGFKKVMVLYgtSEKGSKPDKCNWIMHQYHI 528
                 ******9.999***********6644666667*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.70.98.109.5E-913285IPR014718Glycoside hydrolase-type carbohydrate-binding
SuperFamilySSF746507.53E-5914284IPR011013Galactose mutarotase-like domain
CDDcd090203.35E-10114285No hitNo description
PfamPF012637.8E-5114284IPR008183Aldose 1-/Glucose-6-phosphate 1-epimerase
SuperFamilySSF1019413.53E-32375547IPR003441NAC domain
PROSITE profilePS5100530.417390547IPR003441NAC domain
PfamPF023651.3E-11391528IPR003441NAC domain
HamapMF_0108015.62510011221IPR014780tRNA pseudouridine synthase II, TruB
SuperFamilySSF551203.24E-7210031215IPR020103Pseudouridine synthase, catalytic domain
TIGRFAMsTIGR004311.4E-6410031212IPR014780tRNA pseudouridine synthase II, TruB
CDDcd025732.39E-9710041215No hitNo description
PfamPF015092.1E-5210231173IPR002501Pseudouridine synthase II, N-terminal
PfamPF161981.8E-811741217IPR032819tRNA pseudouridylate synthase B, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001522Biological Processpseudouridine synthesis
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006396Biological ProcessRNA processing
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0009982Molecular Functionpseudouridine synthase activity
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 1221 aa     Download sequence    Send to blast
MPVNIVQDGD GSQRIILSEP SGSTAEVLMH GGQVVSWKNE RREEMIFMSS KAVRRSSKAI  60
RSGIHINFPQ FTNSSLPEQH GFASTRLWSL DSSPSPLPPA GNQSTVDLLL ESTEDDLKIW  120
PHRFELRLRI SLNAGKLTLI PRVRNTDNKP FSFTFVLCNY LSVSDISEVR VEGLETLDYF  180
DNLLQKERFT EQADAITFDG EIDRVYLSTP TKIAVIDHEK KRTLVLRKDG MPDAVVWNPW  240
DKKAKALPDF GDDDYNTMLC VNSAAIESPI VLKPFEEWRG RQELSTVLSS YCSAGISRSL  300
LSYLAYWRKG NVLHTLLATW NVFSDFTGAN YLFRIMARAW LMDGRGLAKK VKNAGLPAVK  360
QIEDCDVKRE CPNCHYQIDN TDVSEGWPGL PAGVKFDPSD VELLEHLAAK CGVGVSKPHM  420
FIDEFIPTLE GDEGICYTHP ENLPGAKKDG SNAYFFYRTI NAYASGKRKR RRIIHASGRV  480
RWHKTGRTKA VIENVVLKGF KKVMVLYGTS EKGSKPDKCN WIMHQYHIGS QEEEREGEYV  540
VSKIFYQQQK EPSNNVEQTC LVIEESDLGT VQVVPRTPKI CAPNPPRPQK TPAENLEEPS  600
LSDDGTKYAI CLAGESQASD LGGGDSHLRI SMMDSNATLV DQTPNYGALS TQDCSNTTDA  660
ANGFTDVYNL QLDSPPDFHL QDLQFASQDS LSPVVQLKAE RSKRSFSFTG GVKMAKCSHL  720
LARAQLHLLS LRRPRPNPMN SLCPLKLPFV RLFSLTATPY PLQYDMIISR PANPPPNPTR  780
RRQPSSPKSM PKDSEPDQVM GFDEWVDKKL SLDKGGVSID KAKRKYYNKR RKRMYGESDS  840
DGENGQRGNQ SEYIELKQEV VELRTLHKRE EELYFYDAFA YPWEKNKHYK MVYQLEKKYF  900
PDQCFDKAFL QPGETNPKKD KKVSKSQVEA ANEDDKGLVF FEDNDKEPKD MKVEDITEKK  960
VEDFFKCLKK FPNENDGDIA TPEPFLSTRS VGLPPKWDGP NGTVVLVNKP KGWTSFTVCG  1020
KLRRLVQVKK VGHAGTLDPM ATGLLIVCVG KATKFVERYQ GMIKGYSGIF RLGEATSTWD  1080
ADSPVIQREP WEHIKDDDIK KSAASFRGEI WQVPPMFSAI KVGGERMYEK ARKGESIELS  1140
PRRVSIFQFD VERSLEDRQN VVFRVTCSKG TYIRSLCADF GKALGSCAHL TALRRDSIGE  1200
YLADNAWEFQ ELEEAITKGY L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sgv_A5e-4999912145220tRNA pseudouridine synthase B
1sgv_B5e-4999912145220tRNA pseudouridine synthase B
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1466471KRKRRR
2467471RKRRR
3468472KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV57704.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.14e-82NAC domain containing protein 44