PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV57567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 23884.2 Da PI: 11.3744 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr+ AeI d + r r +lg++ taeeAa+a+++a+++++g KZV57567.1 19 RYRGVRKRP-WGRYGAEITDpW-----RkCRLWLGTYNTAEEAARAYDNAARRFRG 68 69*******.**********88.....44************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-28 | 19 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-31 | 19 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.26E-28 | 19 | 76 | No hit | No description |
Pfam | PF00847 | 2.9E-11 | 19 | 68 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-20 | 19 | 76 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.51 | 19 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MAPLRADKNA TNECGHGVRY RGVRKRPWGR YGAEITDPWR KCRLWLGTYN TAEEAARAYD 60 NAARRFRGWR ARTNFPSPQP MVVNTNHLIN YGTAASQTST VESSTDRKAS PAPLGKSVDP 120 GLTLPSLHPF LVQDGYIKLL PAAAAFAGLN IDPVQTSLLK LGPESQKKIA DLMNAVHHVP 180 VSYPFRLSAR KKRDWIFLRR HRRGSGRTHS SRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-17 | 17 | 76 | 3 | 63 | ATERF1 |
3gcc_A | 3e-17 | 17 | 76 | 3 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV57567.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022976583.1 | 8e-34 | ethylene-responsive transcription factor 4-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 2e-21 | ERF domain protein 12 |