PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV57106.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26722 Da PI: 8.3217 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.1 | 2.7e-24 | 10 | 56 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifs +gkly KZV57106.1 10 RIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYQ 56 8********************************************96 PP | |||||||
2 | K-box | 25.7 | 4.7e-10 | 87 | 148 | 13 | 73 |
K-box 13 kaeslqqelakLkkeienLqreqR.hllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 + ++e++ Lk+eie Lq+ + G + + +sl eL+ Le++Le + +iRs+K +++ KZV57106.1 87 HLMDPNKEISMLKQEIEVLQKGLSlISSGGGGGAMSLDELNALEKHLEIWIYHIRSTKCHVV 148 5556689*************765414579999**************************9986 PP | |||||||
3 | K-box | 23 | 3.3e-09 | 161 | 199 | 62 | 100 |
K-box 62 lkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +iRs+K+++++++i+ l++ke lq +n+ L+ k++e KZV57106.1 161 IYHIRSTKMNIMFQEIQLLKNKEGILQAANMHLQDKIDE 199 689*********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 9.03E-27 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.889 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.08E-37 | 2 | 74 | No hit | No description |
PRINTS | PR00404 | 9.1E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-22 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.498 | 88 | 203 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.2E-8 | 92 | 148 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.1E-6 | 161 | 197 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MARGKIQLRR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSA HGKLYQQATK 60 GTMQDLIARY IKYNPEATAE DPKLDNHLMD PNKEISMLKQ EIEVLQKGLS LISSGGGGGA 120 MSLDELNALE KHLEIWIYHI RSTKCHVVVG GMRLGNELCR IYHIRSTKMN IMFQEIQLLK 180 NKEGILQAAN MHLQDKIDEQ FEMAANMASM SKDDLEYPLT TNILGTHNDY GIYQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-17 | 1 | 74 | 1 | 73 | MEF2C |
5f28_B | 3e-17 | 1 | 74 | 1 | 73 | MEF2C |
5f28_C | 3e-17 | 1 | 74 | 1 | 73 | MEF2C |
5f28_D | 3e-17 | 1 | 74 | 1 | 73 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV57106.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095942.1 | 1e-89 | agamous-like MADS-box protein AGL12 isoform X1 | ||||
Swissprot | A2YQK9 | 1e-65 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 1e-65 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A2Z7DE53 | 1e-175 | A0A2Z7DE53_9LAMI; Uncharacterized protein | ||||
STRING | Solyc11g032100.1.1 | 6e-85 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9810 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 7e-52 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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