PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV56759.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 281aa    MW: 30252.4 Da    PI: 8.2336
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV56759.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-091054345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +W  e d ++ +a + ++ +   +W++Ia+ ++ g++l+++k ++ 
       KZV56759.1 10 SWNREQDVQFERALATYPEDlsdRWEKIAADVP-GKSLEEVKQHYE 54
                     7********************************.**********95 PP

2Myb_DNA-binding45.71.5e-14121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
       KZV56759.1 121 AWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165
                      6*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.244661IPR017884SANT domain
SMARTSM007171.1E-7759IPR001005SANT/Myb domain
SuperFamilySSF466895.96E-11965IPR009057Homeodomain-like
PfamPF002494.6E-71054IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-51063IPR009057Homeodomain-like
CDDcd001672.29E-81157No hitNo description
PROSITE profilePS5129418.201113170IPR017930Myb domain
SuperFamilySSF466892.62E-17116171IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17118168IPR006447Myb domain, plants
SMARTSM007171.1E-11118168IPR001005SANT/Myb domain
CDDcd001672.93E-11121166No hitNo description
PfamPF002492.0E-12121165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-11121164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MPASESSSSS WNREQDVQFE RALATYPEDL SDRWEKIAAD VPGKSLEEVK QHYELLVDDV  60
NRIESGFIQV PCYNSSSDGS SSHGGDEGIC KKSGNSGLLN SDSNHGSKSS RSDQERRKGI  120
AWTEEEHRLF LLGLEKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS  180
IHDITSVNNG DVSVPQGPIT GQANGSTGGG GSSGKSNKQP PQSSGIPVYG APTMGQPIRG  240
PLVSAVGTPV NLPPPHLAYG VVPGAPVGPL TYPMPHPSVS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-15176176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV56759.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070471.11e-160transcription factor SRM1
RefseqXP_011070472.11e-160transcription factor SRM1
RefseqXP_020547442.11e-160transcription factor SRM1
RefseqXP_020547443.11e-160transcription factor SRM1
SwissprotQ9FNN61e-111SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2Z7DA870.0A0A2Z7DA87_9LAMI; Transcription factor DIVARICATA
STRINGEMJ244541e-148(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-98MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]