PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV56477.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 328aa    MW: 36805.1 Da    PI: 5.2199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV56477.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.2e-152067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ +ar  g+ R++k+c++rw +yl
       KZV56477.1 20 KGLWSPEEDEKLMNYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 67
                     678*******************************************97 PP
2Myb_DNA-binding43.19.7e-1473116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E+  +v+++  lG++ W+ Ia++++ gRt++++k++w++
       KZV56477.1  73 RGAFSSQEEGMIVHLHSVLGNR-WSQIAARLP-GRTDNEIKNFWNS 116
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1121567IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-221670IPR009057Homeodomain-like
SuperFamilySSF466892.23E-2717114IPR009057Homeodomain-like
SMARTSM007171.3E-101969IPR001005SANT/Myb domain
PfamPF002491.5E-132067IPR001005SANT/Myb domain
CDDcd001672.63E-92367No hitNo description
PROSITE profilePS5129422.40968122IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2471122IPR009057Homeodomain-like
SMARTSM007174.9E-1272120IPR001005SANT/Myb domain
PfamPF002496.6E-1273116IPR001005SANT/Myb domain
CDDcd001671.95E-875115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRKPAENNGA VNGVVPKLRK GLWSPEEDEK LMNYMLTNGQ GCWSDVARNA GLQRCGKSCR  60
LRWINYLRPD LKRGAFSSQE EGMIVHLHSV LGNRWSQIAA RLPGRTDNEI KNFWNSTIKK  120
RLKGSNSTTS PITSTDSSMD QQNITDHAGG LVDMTMQELM DLSSSSAIST LYDSVAPVID  180
QPMMDPYHHD HGYFPKDGLY FDVQRPCITQ PPPKIEYDHD GSIGVLIGDF ISMEGKIIDN  240
TTSDNTDNIK ESSKTTKNYS LKVRTHTNTS KINEQYSSID ISDNNVGVEH MAGFGDYWVG  300
GEGENWDLEE VMKLDVHSFP FLDFQVDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28151222108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV56477.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615450.11e-92transcription factor MYB46-like
TrEMBLA0A2Z7DB480.0A0A2Z7DB48_9LAMI; Uncharacterized protein
STRINGcassava4.1_011597m4e-92(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-70myb domain protein 46