PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV56172.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NAC

Protein Properties

Length: 323aa MW: 37467.9 Da PI: 4.8827

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV56172.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.7	5.1e-45	28	152	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 p+G+rF Pt+eel+ +yL+kk++++++e+ +i +vd yk++Pw L + + ++ewyfF++r+ ky++g+r+nra+++gyWkat d+++ + ++e+ KZV56172.1 28 PVGMRFAPTEEELI-YYLRKKIKNEPFEE-VCICSVDFYKYNPWVLTdMYPTLAKDEWYFFTSRKLKYPNGSRPNRAADDGYWKATVADQRIQE-RQEV 123 89**********.*******998.67**********8444444778**********************************9.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g kktLvfy+g+ap+g+kt+W+mhey+l KZV56172.1 124 IGFKKTLVFYHGKAPNGKKTNWIMHEYTL 152 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-48	24	177	IPR003441	NAC domain
PROSITE profile	PS51005	46.855	27	178	IPR003441	NAC domain
Pfam	PF02365	1.4E-23	28	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MEPHQQSPTP ANPNQEPAPN ENAVPKFPVG MRFAPTEEEL IYYLRKKIKN EPFEEVCICS 60 VDFYKYNPWV LTDMYPTLAK DEWYFFTSRK LKYPNGSRPN RAADDGYWKA TVADQRIQER 120 QEVIGFKKTL VFYHGKAPNG KKTNWIMHEY TLRQRSTRND ANNNMRSDNC VLCRIYERKR 180 AAVIQPNLPM QNVEVPLTNQ ARPHLEPFIV DWNLMDIDAN LSFMSTYPNG FGDVDFSDQD 240 SNGFGHLDFP YQNFNHFSSL DFFDQPFSIT GLLQLDNCVP CRIYERKPAA VSSSNSACVT 300 NNNDSMEDEV IEDIGQYLLD NFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	27	182	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	27	182	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	27	182	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	27	182	17	169	NO APICAL MERISTEM PROTEIN
4dul_A	2e-45	27	182	17	169	NAC domain-containing protein 19
4dul_B	2e-45	27	182	17	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in regulation of seed germination under flooding. {ECO:0000269\|PubMed:19176720}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV56172.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By low-oxygen stress. {ECO:0000269\|PubMed:19176720}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351144.1	2e-50	PREDICTED: NAC domain-containing protein 2-like
Swissprot	Q8H115	3e-48	NA102_ARATH; NAC domain-containing protein 102
TrEMBL	A0A2Z7DFL2	0.0	A0A2Z7DFL2_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400023917	6e-50	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63790.1	2e-50	NAC domain containing protein 102

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]