PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV56170.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NAC
Protein Properties Length: 266aa    MW: 30211.1 Da    PI: 9.6786
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV56170.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.94.3e-45611853127
         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                  GfrF P+deel+++yL+kk++g++ ++ ++i++++iy++ P++L   + + +++ewyfFs+r++kya+g+r+ ra+ +gyWkat  dk++++ + elv
  KZV56170.1  61 SGFRFLPKDEELITDYLNKKINGEDSPCIRMISTINIYRHSPEELAgLHQSLGDEEWYFFSSRERKYANGSRPDRAAGNGYWKATAADKKIHQ-NAELV 158
                 7**************************9999**************9445555999*************************************9.999** PP

         NAM 101 glkktLvfykgrapkgektdWvmheyr 127
                 g++k Lvfy+gr p+g+kt+W+mhe+ 
  KZV56170.1 159 GTRKFLVFYEGRPPNGRKTKWIMHEFV 185
                 *************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-4853212IPR003441NAC domain
PROSITE profilePS5100548.859213IPR003441NAC domain
PfamPF023659.4E-2361184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MESDHQSPTA ANPNRGGALN IEGTLAVGEV LRADVYRPNK QLVTYHRRIT DGGYVAVHIS  60
SGFRFLPKDE ELITDYLNKK INGEDSPCIR MISTINIYRH SPEELAGLHQ SLGDEEWYFF  120
SSRERKYANG SRPDRAAGNG YWKATAADKK IHQNAELVGT RKFLVFYEGR PPNGRKTKWI  180
MHEFVSAKQP ARQRTGPNDM RLDDCVLCRI HRSEYSTKRP EKQSSGAASE CGKSCKKNQA  240
APKRARTELQ DTDKHLNPVL MLYSWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-445721918174NAC domain-containing protein 19
3swm_B4e-445721918174NAC domain-containing protein 19
3swm_C4e-445721918174NAC domain-containing protein 19
3swm_D4e-445721918174NAC domain-containing protein 19
3swp_A4e-445721918174NAC domain-containing protein 19
3swp_B4e-445721918174NAC domain-containing protein 19
3swp_C4e-445721918174NAC domain-containing protein 19
3swp_D4e-445721918174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV56170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ8GY424e-46NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A2Z7D9700.0A0A2Z7D970_9LAMI; Uncharacterized protein
STRINGXP_008227355.18e-54(Prunus mume)
STRINGEMJ156853e-54(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-48NAC domain containing protein 25