PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV56104.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 748aa    MW: 83685 Da    PI: 6.3416
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV56104.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.6e-2092147156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t++q+ e+e+lF+++++p++++r  L+k+lgL  rqVk+WFqNrR++ k
  KZV56104.1  92 RKKYHRHTPSQIGEMEALFKESPHPDEKQRLYLSKQLGLHPRQVKFWFQNRRTQIK 147
                 7999************************************************9877 PP
2START198.92.2e-622654883206
                 HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 a++a++el+k+a+ +ep+Wv+s+    e++n+de+++++  +++       +s+ea+r+s+vv+ +l+ lv++++d + qW+e ++    +a+t++  +
  KZV56104.1 265 ANQAMDELQKMATYGEPLWVRSYesgrEILNYDEYRKQICAENSssrmqgkKSVEASRDSRVVFVDLPWLVQSFMDAN-QWKELFPnlisRAATVDIFC 362
                 6789********************************9998877789********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                  g      ga++l++ae q l+p+v+ R+ +f+Ry++ql+a++w+i dvS+d +++++ + sv ++++ pSg++ie++ ngh+kv+wvehv+++++++ 
  KZV56104.1 363 HGegvkkdGAVHLIFAEIQILTPMVAtREMYFIRYSKQLSAHQWAITDVSIDRDEDNT-ETSVLKCRKCPSGCIIEDNFNGHCKVIWVEHVECQKSTVN 460
                 **********************************************************.8*************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +++rs+++sg+a+gak+w +tlq+qce+
  KZV56104.1 461 SMYRSIINSGQAFGAKHWISTLQQQCER 488
                 **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.09E-1985150IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2087156IPR009057Homeodomain-like
PROSITE profilePS5007116.98989149IPR001356Homeobox domain
SMARTSM003891.1E-1891153IPR001356Homeobox domain
PfamPF000469.0E-1892147IPR001356Homeobox domain
CDDcd000861.06E-1692147No hitNo description
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PROSITE profilePS5084836.193254491IPR002913START domain
SuperFamilySSF559616.32E-28257488No hitNo description
CDDcd088754.61E-93258487No hitNo description
SMARTSM002341.6E-56263488IPR002913START domain
PfamPF018521.1E-49265488IPR002913START domain
SuperFamilySSF559612.75E-11521735No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MSDSPNSRHA RDFLSTPHLS LSLAGIFRDA GAAAYEVGER AEKGGGGKEE TVEISSENSG  60
PGNDDFEMAE GEQQNIEDDE DEEGDGIKEK KRKKYHRHTP SQIGEMEALF KESPHPDEKQ  120
RLYLSKQLGL HPRQVKFWFQ NRRTQIKAIQ ERHESTLLKT EIEKLRQETK ALREAVKNSS  180
CPNCGFSNTT KDVMAATEEE QKLRVENAKL KAEVERLRTM VGKYYGGTSP NSSSHTSEND  240
QGNRGSLEFY KGIFGFEKSR ILDAANQAMD ELQKMATYGE PLWVRSYESG REILNYDEYR  300
KQICAENSSS RMQGKKSVEA SRDSRVVFVD LPWLVQSFMD ANQWKELFPN LISRAATVDI  360
FCHGEGVKKD GAVHLIFAEI QILTPMVATR EMYFIRYSKQ LSAHQWAITD VSIDRDEDNT  420
ETSVLKCRKC PSGCIIEDNF NGHCKVIWVE HVECQKSTVN SMYRSIINSG QAFGAKHWIS  480
TLQQQCERHV FYMATNVPTK DSSGVTTLAG RKSILKLAQR MTASYCRALN TSSYNSWNKI  540
ASKTGDDIRV ASRKNVNDPG EPNGVILCAA TSVWLPVAHH VLFDYLRDEN QRKEWDIMFN  600
GSAVQSVANI AKGQVRGNAV TVLAMKGDEH NMWVLQDSAT NAYESTVIYA PVDINGMQSV  660
MTGCDSNNIA ILPSGFSIIA DGIESRPSVI GFSPEEKCTE GGSLLTIAFQ ILLRNSPTAK  720
LSAESVESVN TLISCTLQNI KRSLQCED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18993KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV56104.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072373.10.0homeobox-leucine zipper protein GLABRA 2 isoform X1
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2Z7DFB80.0A0A2Z7DFB8_9LAMI; Homeobox-leucine zipper protein GLABRA 2
STRINGVIT_09s0002g04340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62282328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]