PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV56019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 188aa MW: 21872.8 Da PI: 10.3164 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.6 | 1.2e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ KZV56019.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 113.9 | 1.5e-37 | 92 | 187 | 3 | 98 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +s++ s++ea+++++qqe++kL+++i+nLq+ +R+++Ge+L+ L+l+eL++Le+++e+++++iRskKnell+++ie++qk+e +l+++n++Lr+k+ KZV56019.1 92 SSNNGSVAEANTQYYQQEASKLRAQISNLQNHNRNMIGESLGGLTLRELKNLETKVERGISRIRSKKNELLFAEIEYMQKREIDLHHNNQYLRAKV 187 3444449**************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-40 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.095 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.01E-43 | 18 | 94 | No hit | No description |
PRINTS | PR00404 | 3.3E-33 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-33 | 19 | 91 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.6E-27 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-33 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-33 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.0E-27 | 101 | 187 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.431 | 103 | 188 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEFHNEQARD LSPQRKIARG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSNRGRL YEYANNSVKT TIERYKKASS DSSNNGSVAE ANTQYYQQEA SKLRAQISNL 120 QNHNRNMIGE SLGGLTLREL KNLETKVERG ISRIRSKKNE LLFAEIEYMQ KREIDLHHNN 180 QYLRAKVH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 17 | 101 | 1 | 87 | MEF2C |
5f28_B | 3e-20 | 17 | 101 | 1 | 87 | MEF2C |
5f28_C | 3e-20 | 17 | 101 | 1 | 87 | MEF2C |
5f28_D | 3e-20 | 17 | 101 | 1 | 87 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV56019.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011102155.1 | 1e-121 | floral homeotic protein AGAMOUS-like isoform X2 | ||||
Swissprot | Q43585 | 1e-115 | AG_TOBAC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A2Z7D8Y7 | 1e-134 | A0A2Z7D8Y7_9LAMI; MADS-box transcription factor AGAMOUS | ||||
STRING | Migut.M00986.1.p | 1e-116 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-100 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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