PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV55974.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 576aa    MW: 64722.2 Da    PI: 6.0418
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV55974.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.36.1e-1312065751373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+a+s+ +l + ++l+ + +  +s +gdp+qR+ ay++e+L ar   s++++y++l+++e +   s++ ++++++++e++P+lkf++++aN
  KZV55974.1 206 LKQLLVACATALSEYKLDKFEKLVLHARASVSITGDPIQRVGAYMLEGLIARKELSGTNIYHSLKCNEPD---SKDLMSYMHILYEICPYLKFGYMAAN 301
                 689**************************************************99**************9...9999********************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea ++e+r+HiiDf+isqG+QW++LlqaLa+Rp g+p++RiTg+++p s+  + ++l  +g+rLa +  ++++p+ef++ +     d++ ++L+v
  KZV55974.1 302 GAIAEACKNENRIHIIDFQISQGTQWMTLLQALAARPCGAPHVRITGIDDPVSKhaRGDSLALVGRRLAAISVKFNIPVEFHP-IPVFAPDIKRDMLDV 399
                 **************************************************99988999*************************.688899********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEal+Vn+ lqlh+++desv+++++rd +L+lvkslsPkvv++veqe+++n+++Fl+rf+eal+yysa+f+s+++++pr+ +eri+vE+++l+r+iv
  KZV55974.1 400 RPGEALVVNFPLQLHHTPDESVDVSNPRDGLLRLVKSLSPKVVTLVEQESNTNTAPFLQRFIEALDYYSAMFESIDVTMPRDRKERINVEEHCLARDIV 498
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 n++aceg+er+erhe l+kWr r+++aGF+++pls+++++ ++ llr ++ + y++ e++g+++lgWkdr+Lvs+SaW
  KZV55974.1 499 NIIACEGKERVERHELLGKWRLRFMMAGFRAYPLSSYVNSVIRGLLRCYS-ENYTLVEKDGAMLLGWKDRNLVSASAW 575
                 **********************************************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.689180557IPR005202Transcription factor GRAS
PfamPF035142.1E-128206575IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDTNYIEFSV TGAEVSSYPT VSALPANLFS SLEFDAINSS NSPYSTHSDT DTLYAYKGNL  60
EQQSSPDNFY VSTPSSNSLP YYEEYLQQSR PTSFCRQDNL LVRSSGLFSL HSADHNQHIR  120
RALLEMESVL MGPDDDEEVA TSEPCFGENK RSRAPIQGSR GWNHESRGSP LNPSDSVSSS  180
SEEHKMETQY KAMENFALQG FPPNNLKQLL VACATALSEY KLDKFEKLVL HARASVSITG  240
DPIQRVGAYM LEGLIARKEL SGTNIYHSLK CNEPDSKDLM SYMHILYEIC PYLKFGYMAA  300
NGAIAEACKN ENRIHIIDFQ ISQGTQWMTL LQALAARPCG APHVRITGID DPVSKHARGD  360
SLALVGRRLA AISVKFNIPV EFHPIPVFAP DIKRDMLDVR PGEALVVNFP LQLHHTPDES  420
VDVSNPRDGL LRLVKSLSPK VVTLVEQESN TNTAPFLQRF IEALDYYSAM FESIDVTMPR  480
DRKERINVEE HCLARDIVNI IACEGKERVE RHELLGKWRL RFMMAGFRAY PLSSYVNSVI  540
RGLLRCYSEN YTLVEKDGAM LLGWKDRNLV SASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6121357525377Protein SCARECROW
5b3h_D2e-6121357525377Protein SCARECROW
5hyz_A1e-6123357630375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV55974.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095306.10.0scarecrow-like protein 21
RefseqXP_020553937.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2Z7DEX90.0A0A2Z7DEX9_9LAMI; Chitin-inducible gibberellin-responsive protein 1-like
STRINGXP_009594671.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-172GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]