PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV55928.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 337aa    MW: 38014.5 Da    PI: 6.8617
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV55928.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05176195120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C k+F+r  n++ H+
  KZV55928.1 176 FSCPLCFKTFNRYNNMQMHM 195
                 89*****************9 PP
2zf-C2H214.69.5e-05260282123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk F  + + ++H +++
  KZV55928.1 260 FMCRKCGKAFAVRGDWRTHEKNC 282
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-5176195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.61176198IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66176203IPR007087Zinc finger, C2H2
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-6241280No hitNo description
Gene3DG3DSA:3.30.160.608.9E-6256280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808260280IPR007087Zinc finger, C2H2
SMARTSM0035549260280IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MANHRYTYFF NNTGWINLNP IHQTQPYSYN LSFYPSNVSQ NPMFHESSAP SSPPLKEALP  60
LLSSSPVKDH HNQESSAMEV DKELPEEEDE DIEAVKSVTL DLGLSIPDSG LSDYDLISKV  120
SSSSVDTVNI NCNNSSSIDK EEVTVVNSGG YVVNPLNKGQ YWIPTPAQIL IGPTQFSCPL  180
CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL PCYCCTPGCR NNIDHPRSKP  240
LKDFRTLQTH YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKVWYCTC GSDFKHKRSL  300
KDHIKAFGNG HAAYGVDGFE EDDEPASEIE QDNESSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV55928.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080270.11e-161zinc finger protein WIP2-like
SwissprotQ9SVY11e-132ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2Z7D8C00.0A0A2Z7D8C0_9LAMI; Uncharacterized protein
STRINGEOY326021e-154(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-134C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]