PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV55835.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 35482.4 Da PI: 5.8251 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.2e-16 | 83 | 131 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +lg+f + +eAa a+++a+++++g KZV55835.1 83 YRGVRQRT-WGKWVAEIREP-----HrgSRLWLGTFSSGFEAALAYDEAARAMYG 131 9****999.**********6.....337************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.6E-30 | 82 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.008 | 82 | 139 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.36E-29 | 82 | 140 | No hit | No description |
SMART | SM00380 | 2.5E-34 | 82 | 145 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-19 | 83 | 139 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-12 | 83 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 83 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 105 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence Send to blast |
MALLHQDAML VSQPVNHSRT RKSRRRKDGT KNVAETLAKW KEYNVKLDSG NIVDKPKRKA 60 PAKGSKKGCM RGKGGPENVR YNYRGVRQRT WGKWVAEIRE PHRGSRLWLG TFSSGFEAAL 120 AYDEAARAMY GSVARLNFPN YDPSRRGAKE HDYVPTVSTS DSSHSSISEV GNGIMPKIED 180 SDVMSHIGGT SQEADTPMSD GWEGVKIEAM GEEVDQEDIW RELKKEPYES VHNNGNQLEP 240 LSFDQMFDAE ELLTTLGSTS ANAPGAHVGV QHPGSAQTAP QVEQARNGFE LDFLQPGRPE 300 DDHLTLDDLF FDIDPDLVI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 82 | 139 | 5 | 63 | ATERF1 |
3gcc_A | 2e-16 | 82 | 139 | 5 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 20 | 27 | RKSRRRKD |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV55835.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019245341.1 | 1e-79 | PREDICTED: dehydration-responsive element-binding protein 2A-like | ||||
TrEMBL | A0A2Z7DB37 | 0.0 | A0A2Z7DB37_9LAMI; Dehydration-responsive element-binding protein 2A-like | ||||
STRING | XP_009594350.1 | 4e-75 | (Nicotiana tomentosiformis) | ||||
STRING | Migut.F00629.1.p | 2e-75 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3701 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40340.1 | 7e-45 | ERF family protein |