PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV55791.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 858aa    MW: 94861.5 Da    PI: 6.5822
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV55791.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-17295394198
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+kvl+ sd+++ grlvlpk +ae++    +  ++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l+
  KZV55791.1 295 FEKVLSASDAGRIGRLVLPKACAEAYfpliS--QPEGLPLRIQDVKGNEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRME-PEGKLL 389
                 99**************************654..445667***************9989999999***9.********************876.777777 PP

                 EEEE- CS
          B3  94 vkvfr 98 
                 ++ ++
  KZV55791.1 390 MGYRK 394
                 77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-28287398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-19292394IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-21293394No hitNo description
PfamPF023623.0E-15295393IPR003340B3 DNA binding domain
SMARTSM010197.7E-19295395IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828295396IPR003340B3 DNA binding domain
PROSITE profilePS5105013.392551601IPR011124Zinc finger, CW-type
PfamPF074963.2E-9556598IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MDDRVCMNGA CASSNSLVWK KGWPLRSGGL ATLCDNCGDA YKKLIFCEMF HSEDTGWREC  60
STCGKRLHCG CIASSSLLEV LDTGDVNCIG CTKGSTRLRT LTPCQEKNKA CTLSTAGINQ  120
FMDKIPSGHS GDDNKTLCLA HLPPSQNVDT TPLKPEECFP RPGEIVHEAL SSFDLPKDFE  180
ALQECMIQTN LSIGLSASNS NPFPRLIAEE REFCTSITPL KQACKPYHLS PSLPASVFAT  240
GLEQNSSDIS QLRVARPPVE GRVKNQLLPR YWPRITDLEL QQISGDSNST IVPLFEKVLS  300
ASDAGRIGRL VLPKACAEAY FPLISQPEGL PLRIQDVKGN EWVFQFRFWP NNNSRMYVLE  360
GVTPCIQSMQ LQAGDTVTFS RMEPEGKLLM GYRKASNNIL AQPDSYISPV NRGSSQSEPS  420
LTAAKNLNLM SGYSGLPSPL NGGTNSPLVM LSTHAYYTEN NESQLGQNLL SQTLLLPERK  480
RNRNIGLKSK RLLIDGHDAM ELKLSWEEVQ DILRPPPSVK PSMIMVEDHE FEEFEEPPVF  540
GKRSIFIVRL SGEKEQWAQC DSCFKWRKLP VDFLLSSKWT CQDNVQDLNR CSCSAPDELG  600
FRELESLLRM NKEFKKQRIA ASLNSLQADA SAELGALANA AGGGDTSEPN HVSATTTKHP  660
RHRPGCSCIV CIQPPSGKGK HKPTCVCNVC LTVKRRFKTL MMRKKKRQSE RETEIAQRNQ  720
FASADYKNVV EVDGVPSQVI SQLGNGRSES EPFFSCQSDG QSQDYADILK GGGLDLNCCP  780
GQAHTAAPSR ISMMSLLHEA SLPLDTYLRQ NGLTRLLVNS EQQAFSPEET EQDDHGLSTG  840
HEECRNEEKT SHPDTPLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-652733972126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1693704KRRFKTLMMRKK
2693706KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV55791.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095138.10.0B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_020553390.10.0B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_020553391.10.0B3 domain-containing transcription repressor VAL2 isoform X1
TrEMBLA0A2Z7D8N30.0A0A2Z7D8N3_9LAMI; Uncharacterized protein
STRINGMigut.J00040.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1