PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV55760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 359aa MW: 40006.8 Da PI: 6.2858 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.4e-16 | 97 | 142 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++ KZV55760.1 97 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 142 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.8e-17 | 149 | 192 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ KZV55760.1 149 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 192 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.413 | 92 | 143 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-14 | 96 | 145 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.36E-28 | 97 | 190 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-15 | 97 | 142 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-26 | 98 | 150 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.04E-13 | 100 | 141 | No hit | No description |
PROSITE profile | PS51294 | 26.789 | 144 | 198 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-14 | 148 | 196 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-14 | 149 | 191 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.79E-11 | 151 | 191 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 151 | 197 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MFEDLHSLAV SNRFECSSSM EKMSWGFSCL DETQNNCDGK CSDSSDGFGE NNEIIDLNAS 60 LNEEDESNMH AALLSSVKDR EYSSSSTGNG QSKLCARGHW RPAEDAKLKE LVAIYGPQNW 120 NLIAEKLEGR SGKSCRLRWF NQLDPKINRR AFSEEEEERL MAAHRLYGNK WAMIARLFPG 180 RTDNAVKNHW HVIMARKYRE QSSVFRRRKM GQFVCKRSME EDDSPALYNI SADVQVETTC 240 PHFGGVMCAS GGAGATASTG YGFWAPETSA SLLTGSDDMR KMMGIFKNCS KPWDGTIINC 300 YPSYPCVMPA VEQSQSHHYH QHTSEISSSS SSQLVPGIVP TAVERTAPQF IDFLGVGAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-33 | 97 | 197 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV55760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070989.1 | 1e-136 | transcriptional activator Myb | ||||
TrEMBL | A0A2Z7D7Z2 | 0.0 | A0A2Z7D7Z2_9LAMI; Myb-like protein Q | ||||
STRING | Migut.E00083.1.p | 1e-108 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 6e-76 | myb domain protein 105 |