PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV55760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 359aa    MW: 40006.8 Da    PI: 6.2858
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV55760.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-1697142147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
       KZV55760.1  97 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 142
                      899*****************************.***********996 PP

2Myb_DNA-binding55.11.8e-17149192146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
       KZV55760.1 149 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 192
                      678*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.41392143IPR017930Myb domain
SMARTSM007172.4E-1496145IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-2897190IPR009057Homeodomain-like
PfamPF002491.2E-1597142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2698150IPR009057Homeodomain-like
CDDcd001675.04E-13100141No hitNo description
PROSITE profilePS5129426.789144198IPR017930Myb domain
SMARTSM007174.4E-14148196IPR001005SANT/Myb domain
PfamPF002494.7E-14149191IPR001005SANT/Myb domain
CDDcd001674.79E-11151191No hitNo description
Gene3DG3DSA:1.10.10.601.0E-20151197IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MFEDLHSLAV SNRFECSSSM EKMSWGFSCL DETQNNCDGK CSDSSDGFGE NNEIIDLNAS  60
LNEEDESNMH AALLSSVKDR EYSSSSTGNG QSKLCARGHW RPAEDAKLKE LVAIYGPQNW  120
NLIAEKLEGR SGKSCRLRWF NQLDPKINRR AFSEEEEERL MAAHRLYGNK WAMIARLFPG  180
RTDNAVKNHW HVIMARKYRE QSSVFRRRKM GQFVCKRSME EDDSPALYNI SADVQVETTC  240
PHFGGVMCAS GGAGATASTG YGFWAPETSA SLLTGSDDMR KMMGIFKNCS KPWDGTIINC  300
YPSYPCVMPA VEQSQSHHYH QHTSEISSSS SSQLVPGIVP TAVERTAPQF IDFLGVGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-33971977107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV55760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070989.11e-136transcriptional activator Myb
TrEMBLA0A2Z7D7Z20.0A0A2Z7D7Z2_9LAMI; Myb-like protein Q
STRINGMigut.E00083.1.p1e-108(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-76myb domain protein 105