PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV55554.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | B3 | ||||||||
Protein Properties | Length: 80aa MW: 9251.69 Da PI: 10.2346 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.8 | 3.6e-17 | 14 | 75 | 35 | 98 |
EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ +d +g++W++++iy ++++r++l +GW+ Fv++++L +gD++vF + +++ l+v+++ KZV55554.1 14 NVIAKDVHGETWNFRHIYMGTPRRHLLITGWSTFVNQKKLVAGDSIVFLRA--DNRDLCVGIVG 75 68899********************************************44..56667999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.251 | 1 | 77 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0011 | 1 | 77 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-21 | 4 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-17 | 9 | 75 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.27E-13 | 13 | 73 | No hit | No description |
Pfam | PF02362 | 4.7E-15 | 13 | 74 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MHGPNYTADP LMQNVIAKDV HGETWNFRHI YMGTPRRHLL ITGWSTFVNQ KKLVAGDSIV 60 FLRADNRDLC VGIVGRWWTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 2e-22 | 5 | 73 | 154 | 222 | Auxin response factor 1 |
4ldw_A | 2e-22 | 5 | 73 | 154 | 222 | Auxin response factor 1 |
4ldw_B | 2e-22 | 5 | 73 | 154 | 222 | Auxin response factor 1 |
4ldx_A | 2e-22 | 5 | 73 | 154 | 222 | Auxin response factor 1 |
4ldx_B | 2e-22 | 5 | 73 | 154 | 222 | Auxin response factor 1 |
4ldy_A | 2e-22 | 5 | 73 | 154 | 222 | Auxin response factor 1 |
4ldy_B | 2e-22 | 5 | 73 | 154 | 222 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV55554.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089287.1 | 3e-37 | auxin response factor 18 isoform X1 | ||||
Refseq | XP_011089288.1 | 3e-37 | auxin response factor 18 isoform X2 | ||||
Refseq | XP_011089918.1 | 2e-37 | auxin response factor 18-like | ||||
Refseq | XP_020552218.1 | 2e-37 | auxin response factor 18-like | ||||
Refseq | XP_020552360.1 | 3e-37 | auxin response factor 18 isoform X1 | ||||
Swissprot | Q9SKN5 | 3e-34 | ARFJ_ARATH; Auxin response factor 10 | ||||
TrEMBL | A0A2Z7DDT3 | 1e-53 | A0A2Z7DDT3_9LAMI; Auxin response factor 18-like | ||||
STRING | Migut.D02231.1.p | 3e-36 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 1e-36 | auxin response factor 10 |