PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV55273.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 23761.4 Da PI: 8.4892 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.5e-13 | 113 | 157 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky KZV55273.1 113 PWTEEEHRLFLVGLDRFGKGDWRSISRNVVITRTPTQVASHAQKY 157 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.609 | 1 | 55 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0067 | 5 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.52E-8 | 8 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.24E-5 | 9 | 55 | No hit | No description |
PROSITE profile | PS51294 | 19.034 | 106 | 162 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.07E-16 | 108 | 162 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-16 | 109 | 161 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.3E-10 | 110 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-11 | 110 | 160 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.74E-9 | 113 | 157 | No hit | No description |
Pfam | PF00249 | 4.0E-12 | 113 | 157 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MPRNSSAMWD RREDKVFENC LVEIPDTVEN RWQIIATRIP GKSPEDVLLH YEALLHDVGQ 60 IDAGLVEPPS YPDGTSSRGW DDRPRARDSG QISFGSGSSR SRHHEVERKK GTPWTEEEHR 120 LFLVGLDRFG KGDWRSISRN VVITRTPTQV ASHAQKYYIR QSAAKKERKR SSIHDITTAA 180 DSLTVPAQPN LPAPNQRSFQ DFQFQDAAL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV55273.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084236.1 | 1e-91 | transcription factor SRM1-like | ||||
Swissprot | Q8S9H7 | 2e-55 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2Z7D6Y6 | 1e-153 | A0A2Z7D6Y6_9LAMI; Transcription factor DIVARICATA | ||||
STRING | Migut.F01593.1.p | 1e-82 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4547 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 4e-61 | MYB family protein |
Publications ? help Back to Top | |||
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