PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV55203.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 392aa    MW: 44699.9 Da    PI: 6.5015
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV55203.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-101445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg+WT+eEd++l+d++++ G g+W+t ++  g
       KZV55203.1 14 RGPWTPEEDQKLIDYINKNGYGNWRTLPKNAG 45
                     89************************999877 PP
2Myb_DNA-binding55.21.7e-1790134147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++++lG++ W++Ia++++ gRt++++k++w+++
       KZV55203.1  90 RGRFSFEEEETIIQLHRLLGNK-WSAIAARIP-GRTDNEIKNYWNTH 134
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-23587IPR009057Homeodomain-like
PROSITE profilePS5129412.238984IPR017930Myb domain
SuperFamilySSF466894.15E-2711131IPR009057Homeodomain-like
SMARTSM007173.5E-101386IPR001005SANT/Myb domain
PfamPF002494.4E-121484IPR001005SANT/Myb domain
CDDcd001672.79E-91684No hitNo description
PROSITE profilePS5129425.19585139IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-2688139IPR009057Homeodomain-like
SMARTSM007171.8E-1689137IPR001005SANT/Myb domain
PfamPF002494.1E-1690134IPR001005SANT/Myb domain
CDDcd001672.01E-1292135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGRSPCCEKD GLKRGPWTPE EDQKLIDYIN KNGYGNWRTL PKNAGLFSCC FLCVSAKISS  60
FFYANNIGLH RCGKSCRLRW TNYLRPDIKR GRFSFEEEET IIQLHRLLGN KWSAIAARIP  120
GRTDNEIKNY WNTHIRKRLL RMGIDPVTHS PRLDLLDLST ILRTSSNLYD NSTPQMNFSR  180
LLGLHPLINP QLIRLATSLL SSQRQTHEFL IPTASPISYS SQMQTPVQDL QNPNPCLDST  240
PSAALFDQNH SYQFTQNGDF EQIPHILSGF RPTQEIQEFN QWQHNNGIST NLTEDYVPLM  300
NYGCNVSDQH VMDPINSSSD TPTFQYSNNS SNEFGFQSVL SNISTPSSSP APLHSSSNYI  360
YTTSSTDQDH DRTESCSDIL QFEISDIFND FM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121395108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV55203.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096186.11e-150protein ODORANT1
SwissprotQ9LDR89e-99MY102_ARATH; Transcription factor MYB102
TrEMBLA0A2Z7D6S50.0A0A2Z7D6S5_9LAMI; Uncharacterized protein
STRINGMigut.M01224.1.p1e-130(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-100MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]