PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV55179.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 719aa    MW: 78901.4 Da    PI: 6.0981
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV55179.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1853108156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t+ q++e+e++F+++++p+ ++r+eL ++l+L+  qVk+WFqN+R+++k
  KZV55179.1  53 KKQYHRHTQLQIQEMEAFFKECPHPDDKQRKELGRRLNLEPLQVKFWFQNKRTQMK 108
                 688999***********************************************998 PP
2START209.11.6e-652404601206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++a+a+ep+W  s     + +n+ e++++f+ + +      ++ea+r+s+vv+m++a+lve+l+d++ qW  ++     +a+tlev+s
  KZV55179.1 240 ELAVAAMEELIRMAQAGEPLWIPSTgnsaDRLNEAEYMRTFPCGIGpkplgLKSEASRESTVVIMNHANLVEILMDSN-QWASMFSsivsRAMTLEVLS 337
                 57899*******************99999************99999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+ae+q++splvp R++ f+Ry++ ++++ w++vdvS+d+ q+ +    + R++++pSg+li++++ng+skv wvehv++++r +h
  KZV55179.1 338 TGvagnydGALQVMTAEFQVPSPLVPtRKSFFARYCKHHTDEFWAVVDVSLDNLQPTS----LPRCRRRPSGCLIQELPNGYSKVMWVEHVEVDDRAVH 432
                 *******************************************************976....79*********************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +++++lv+sgla+ga +wvatl+rqce+
  KZV55179.1 433 NIYKPLVNSGLAFGAPRWVATLDRQCER 460
                 **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-2037104IPR009057Homeodomain-like
SuperFamilySSF466891.5E-1838110IPR009057Homeodomain-like
PROSITE profilePS5007116.09950110IPR001356Homeobox domain
SMARTSM003891.5E-1652114IPR001356Homeobox domain
PfamPF000462.6E-1653108IPR001356Homeobox domain
CDDcd000862.82E-1753111No hitNo description
SuperFamilySSF559616.14E-35238462No hitNo description
PROSITE profilePS5084840.8238463IPR002913START domain
CDDcd088751.60E-123238459No hitNo description
SMARTSM002346.5E-58240460IPR002913START domain
PfamPF018521.8E-54241460IPR002913START domain
SuperFamilySSF559611.01E-23480711No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MFDSHHHLLA MGHKPLENEM DLIRDDEYES KSGTEIMEAP SGDDQDPNPR PKKKQYHRHT  60
QLQIQEMEAF FKECPHPDDK QRKELGRRLN LEPLQVKFWF QNKRTQMKSQ HERHENTQLR  120
NENEKLRAEN IRYKEAVGNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISGIAA  180
KYVGKPMLSY PHLSPGASHS LDLGVGNFGP QAGMTGDIYG AADLLRTVSG PTDVDKPIIE  240
LAVAAMEELI RMAQAGEPLW IPSTGNSADR LNEAEYMRTF PCGIGPKPLG LKSEASREST  300
VVIMNHANLV EILMDSNQWA SMFSSIVSRA MTLEVLSTGV AGNYDGALQV MTAEFQVPSP  360
LVPTRKSFFA RYCKHHTDEF WAVVDVSLDN LQPTSLPRCR RRPSGCLIQE LPNGYSKVMW  420
VEHVEVDDRA VHNIYKPLVN SGLAFGAPRW VATLDRQCER LASVMANTTS AGDGGVISSP  480
EGRKGMLKLA ERMVMSFCTG VGASTAHTWT TLSGSGADDV RVMTRKSMDD PGRPPGIVLS  540
AATSFWLPLP PKRVFNFLRD ENTRNEWDIL SNGGLVQEIA HIANGRHPSN SVSLLRVNSA  600
NSSQSNMLIL QESCTDSTGS YVIYAPIDIV AMNAVLSGGD PDYVALLPSG FAILPDGPNN  660
STGETPEVGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIKCTVERI KEAVLRDAT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV55179.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096101.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096102.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096103.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554106.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554107.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A2Z7D9D80.0A0A2Z7D9D8_9LAMI; Uncharacterized protein
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]