PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV54794.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

FAR1

Protein Properties

Length: 347aa MW: 40197.6 Da PI: 8.262

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV54794.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.9	7.1e-23	11	107	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA+++GFs r ++skk+k ++e+++++fvC keg+++e +++ + ++r r rtgCk kl++ ke+ ++w ++ + ++HnH+l+ KZV54794.1 11 SFYNQYARQAGFSARLNNSKKNKITNEVVWKQFVCFKEGYTDEIRSSkklihdQPIRERARGGVRTGCKSKLTIGKEQtGSNWIISIFIENHNHQLS 107 5*************************************99987777899755556678889********999899************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-20	11	107	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.829	234	272	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-5	247	266	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	247	274	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MRFALIDEAF SFYNQYARQA GFSARLNNSK KNKITNEVVW KQFVCFKEGY TDEIRSSKKL 60 IHDQPIRERA RGGVRTGCKS KLTIGKEQTG SNWIISIFIE NHNHQLSTPS KVHLLRSHRS 120 VSAAKKTLTQ QFAEANVPTY QQMRLLEIEY GGAEHVGCTE RDIRNFEKEQ RDEQKGFDAE 180 TLIEFFESEK EKNSDFFFSY ETDSEGRFCR CFWADHDGCM VYDIISFQSS SISKPRVLSH 240 NQKMDYISCS CMKFEFEGIP CRHMLAFFRI NQVFKLPEKY ILKRWTRDAK VGGHLLGQKN 300 VDDNPEKCLM SRHSKLSYKA AMVIDNASLT DEGTDHADDL PPKLTLI

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MRFALIDEAF SFYNQYARQA GFSARLNNSK KNKITNEVVW KQFVCFKEGY TDEIRSSKKL  60
IHDQPIRERA RGGVRTGCKS KLTIGKEQTG SNWIISIFIE NHNHQLSTPS KVHLLRSHRS  120
VSAAKKTLTQ QFAEANVPTY QQMRLLEIEY GGAEHVGCTE RDIRNFEKEQ RDEQKGFDAE  180
TLIEFFESEK EKNSDFFFSY ETDSEGRFCR CFWADHDGCM VYDIISFQSS SISKPRVLSH  240
NQKMDYISCS CMKFEFEGIP CRHMLAFFRI NQVFKLPEKY ILKRWTRDAK VGGHLLGQKN  300
VDDNPEKCLM SRHSKLSYKA AMVIDNASLT DEGTDHADDL PPKLTLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV54794.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015878435.1	5e-82	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2Z7D587	0.0	A0A2Z7D587_9LAMI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-35	FAR1-related sequence 5