PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54599.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ZF-HD
Protein Properties Length: 368aa    MW: 39627 Da    PI: 8.3832
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54599.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.61.7e-3468124358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v YkeClkNhAa+lGghavDGCgEfmps+ ++ +++++lkCaACgCHRnFHRre++
   KZV54599.1  68 VVSYKECLKNHAANLGGHAVDGCGEFMPSPASNpAEPTSLKCAACGCHRNFHRREPD 124
                  589****************************999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.6E-2969123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2369125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-3071122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.27871122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.24E-18207281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28210282IPR009057Homeodomain-like
TIGRFAMsTIGR015657.3E-24220277IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDHQLSNSTP TNAAVPKAPE ADTETPTRIQ PTNKHSPFSN GVLKRHAPLS VHHAGGVAGG  60
FGCHHPVVVS YKECLKNHAA NLGGHAVDGC GEFMPSPASN PAEPTSLKCA ACGCHRNFHR  120
REPDDPPLVL PNATPALEYQ PHHRHHPLPP VLASNRGNSS SSPNNSPSPP PISSSYYPSA  180
PHMLLALSHG LSGPPPDCSQ PIPISINASS TPLSSSPNGR KRFRTKFTQD QKGRMFEFAE  240
RICWKMQKKD EDLISEFCAE TGIDRGVFKV WMHNNKNTLG KKDQPQQLTN NLTDKSPNTN  300
GGIGYPSAVG TSAAASASTA LHFHPHPHHH HHHHHHESNN DMKHSIHGQE LSHTAAHVLG  360
TNGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-212212781875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54599.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022864994.11e-128zinc-finger homeodomain protein 9-like
SwissprotQ9LHF02e-66ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A2Z7D7R10.0A0A2Z7D7R1_9LAMI; Zinc-finger homeodomain protein 9
STRINGXP_009620291.12e-96(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.17e-68homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]