PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54592.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 278aa    MW: 30711.3 Da    PI: 5.8302
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54592.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv  v++ G+g+W++++++ g++R+ k+c++rw +yl
       KZV54592.1 14 KGPWTPEEDIMLVSFVQENGPGNWRAVPSKTGLKRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding49.41e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
       KZV54592.1  67 RGSFTDDEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDVKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.285961IPR017930Myb domain
SuperFamilySSF466894.49E-3011108IPR009057Homeodomain-like
SMARTSM007172.7E-141363IPR001005SANT/Myb domain
PfamPF002498.0E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-231568IPR009057Homeodomain-like
CDDcd001675.71E-111661No hitNo description
PROSITE profilePS5129424.73262116IPR017930Myb domain
SMARTSM007177.1E-1666114IPR001005SANT/Myb domain
PfamPF002497.5E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2569116IPR009057Homeodomain-like
CDDcd001671.28E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRPPCCDEI GVKKGPWTPE EDIMLVSFVQ ENGPGNWRAV PSKTGLKRCS KSCRLRWTNY  60
LRPGIKRGSF TDDEEKMIIQ LQALLGNKWA AIASYLPERT DNDVKNYWNT HLKKKLRKLE  120
IGLGDPSNTV EFSPRSSHSI SRGLSERRLQ SDMNTAEDAL LSSENAGHSP PGQAFSYASS  180
TENIARLLKD WVKKTPKVDE NQSSDDQILT PGVQSKSGID LSEAFESLFG FGQCYGSSSC  240
SGLSGSVSDG EPDPNGFAVL ENWLFDDQAK GYLTNFGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-27141164105MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-271411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-271411658159MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-27141164105C-Myb DNA-Binding Domain
1msf_C1e-27141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54592.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098622.11e-126myb-related protein 306
SwissprotQ9SN781e-90MYB94_ARATH; Transcription factor MYB94
TrEMBLA0A2Z7D4Q00.0A0A2Z7D4Q0_9LAMI; Uncharacterized protein
STRINGMigut.H00921.1.p1e-112(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.14e-90myb domain protein 94
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  4. Lee SB,Kim HU,Suh MC
    MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
    Plant Cell Physiol., 2016. 57(11): p. 2300-2311
    [PMID:27577115]