PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54549.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 570aa    MW: 65659.6 Da    PI: 9.2638
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54549.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-15353438396
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 kvl  s+ + ++rl+lp  f+++hg++      + l+ +sg+sW vkl  +   ++ ++t GW++F+++ gL+ g+f+vF l ++s+f   v++
  KZV54549.1 353 KVL--SNEGFTRRLRLPIAFMRKHGEI--LAENVLLRASSGESWVVKL--EHIEDANYFTLGWSKFADDLGLRIGEFLVFFLAEKSTF--DVSL 438
                 555..67777889***********988..4557***************..9999999***********************99876666..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF479542.72E-4798237IPR013763Cyclin-like
PfamPF001342.7E-41109237IPR006671Cyclin, N-terminal
Gene3DG3DSA:1.10.472.108.3E-47128231IPR013763Cyclin-like
CDDcd000437.65E-22141230No hitNo description
PROSITE patternPS002920142173IPR006671Cyclin, N-terminal
SMARTSM003851.1E-25147231IPR013763Cyclin-like
SuperFamilySSF479542.11E-31216362IPR013763Cyclin-like
Gene3DG3DSA:1.10.472.109.0E-39232353IPR013763Cyclin-like
PfamPF029841.4E-30240354IPR004367Cyclin, C-terminal domain
SMARTSM013324.3E-34240358IPR004367Cyclin, C-terminal domain
CDDcd000433.60E-14240331No hitNo description
SMARTSM003853.9E-17244332IPR013763Cyclin-like
PROSITE profilePS5086313.733349442IPR003340B3 DNA binding domain
SMARTSM010192.5E-12351442IPR003340B3 DNA binding domain
PfamPF023622.1E-12353434IPR003340B3 DNA binding domain
CDDcd100176.58E-15353439No hitNo description
Gene3DG3DSA:2.40.330.108.2E-19354444IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-19355444IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-7474559IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-8474559IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.12479568IPR003340B3 DNA binding domain
PROSITE profilePS508636.188527567IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MADQENCVRV TRLAAKKRAA AESSQEHNKK KRVVLGEIQN VVSSRDLGLG KKMKCDVAMR  60
KKEVKPKRVA KNSKSSVKDT SGVKEDYDSG FDVNAESDDP QMCGAYVSDI YGYLHSMEMD  120
VKRRPLADYL EKIQKDVTAN MRGILLDWLV EVAEEYKLVS DSLYLTVSYI DRFLSTNSIN  180
RQKLQLLGVS SMLIASKYEE ITPPHVEDFC YITDNTYTKE EVVKMEADVL KSLKFEMGNP  240
TVKTFLRRFT RIAQEDYKDS ILQVEFLGYY LAELSLLDYE CIKFLPSLIA ASVIFLTRYT  300
LQPNQHPWNL DLQRHSRYKA MDLKECVHIL HDLQLRKKGA SLLAVREKYN QHKVLSNEGF  360
TRRLRLPIAF MRKHGEILAE NVLLRASSGE SWVVKLEHIE DANYFTLGWS KFADDLGLRI  420
GEFLVFFLAE KSTFDVSLFG ISGCERAISN HKSGFGTDER VEILEKEARN VDRSSPLYFE  480
MVLKKHHISR VHLSVEFAKK SGLIRQNRVV LEYVPKQHFT TATLHLKGRS RLDLTWPGFV  540
RENQLVFGRT YSFEFNPKTN VILVNEKIKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4bcn_B2e-591063538247CYCLIN-A2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11531KKRAAAESSQEHNKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069760.10.0putative cyclin-A3-1
RefseqXP_012838766.10.0PREDICTED: putative cyclin-A3-1
SwissprotQ9FMH51e-145CCA31_ARATH; Putative cyclin-A3-1
TrEMBLA0A2Z7D7L50.0A0A2Z7D7L5_9LAMI; Uncharacterized protein
STRINGMigut.N02756.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.15e-12B3 family protein
Publications ? help Back to Top
  1. Wang G, et al.
    Genome-wide analysis of the cyclin family in Arabidopsis and comparative phylogenetic analysis of plant cyclin-like proteins.
    Plant Physiol., 2004. 135(2): p. 1084-99
    [PMID:15208425]
  2. Dohmann EM, et al.
    The Arabidopsis COP9 signalosome is essential for G2 phase progression and genomic stability.
    Development, 2008. 135(11): p. 2013-22
    [PMID:18434413]
  3. Takahashi I,Kojima S,Sakaguchi N,Umeda-Hara C,Umeda M
    Two Arabidopsis cyclin A3s possess G1 cyclin-like features.
    Plant Cell Rep., 2010. 29(4): p. 307-15
    [PMID:20130883]