PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54537.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 432aa    MW: 48735.3 Da    PI: 6.3842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54537.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.3e-18134180148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W++eEd +l ++vkq+G + W++Ia +m  gR +kqc++rw+++l
       KZV54537.1 134 KGQWSEEEDRKLTKLVKQYGLRKWALIADKMV-GRIGKQCRERWHNHL 180
                      799*****************************.*************97 PP
2Myb_DNA-binding54.92e-17188228345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W+ eE+ l+++a+++ G++ W+ Ia++++ gRt++++k++w+
       KZV54537.1 188 IWSDEEERLFIEAHERVGNK-WAEIAKCIP-GRTENSIKNHWN 228
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.018129184IPR017930Myb domain
SuperFamilySSF466895.39E-29131227IPR009057Homeodomain-like
SMARTSM007177.1E-17133182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-26135187IPR009057Homeodomain-like
PfamPF139215.6E-17137195No hitNo description
CDDcd001673.62E-15137180No hitNo description
SMARTSM007173.7E-15185233IPR001005SANT/Myb domain
PROSITE profilePS5129418.073185235IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-19188233IPR009057Homeodomain-like
CDDcd001671.35E-12189228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEGGGRRDFL NGNLGNTSFS LIQPSPQFSA IDKFLWDQNN FSNPQTLFNT CINISNASSN  60
FSSGFGAAIN SKEGVFERSF GQDSGFVNEL FDQWNQDKDH GSSNCKMAEL AEESSDHVKS  120
IGKGVSSGTP KWIKGQWSEE EDRKLTKLVK QYGLRKWALI ADKMVGRIGK QCRERWHNHL  180
RPDIKKDIWS DEEERLFIEA HERVGNKWAE IAKCIPGRTE NSIKNHWNAT RRKQNTKRKL  240
RRSIDQGLNG KMPSILLEEY IKKKYSNKSG PSDISIVASS PNSKNLHEIS SQVGTSSTSE  300
VDGDSTSYFT LQTCDDEMNF MKNLFGNIES RDSMIDNGKL MSSDNVNIAK NNETSIEVPR  360
SVHTTMTIAE NPVEHVEYGT LSSSWEPNLE QIGDIMGIHI QKGVHDMHLY PEIYFGSYVF  420
DGSLGDIIQA WP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-431282361110B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54537.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7D6D60.0A0A2Z7D6D6_9LAMI; Uncharacterized protein
STRINGXP_010257103.12e-69(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.16e-66myb domain protein 119