PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV54518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | AP2 | ||||||||
Protein Properties | Length: 585aa MW: 64807.2 Da PI: 7.177 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.1 | 3.9e-12 | 245 | 301 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g KZV54518.1 245 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 301 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 46.6 | 8.3e-15 | 346 | 395 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g KZV54518.1 346 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 395 9***************988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-9 | 245 | 301 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-14 | 245 | 311 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.06E-19 | 245 | 309 | No hit | No description |
SMART | SM00380 | 6.0E-21 | 246 | 315 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-12 | 246 | 310 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.253 | 246 | 309 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 247 | 258 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.33E-25 | 344 | 405 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-18 | 344 | 405 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-33 | 345 | 409 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-18 | 345 | 403 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.19 | 345 | 403 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 346 | 395 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 385 | 405 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MISEANHTTN GVAAAASFCL SSSQLNNSAM CYGVAENGVF HSPLSVMPLK SDGSLCIMEA 60 FSRSQSGAMV PNSSPKLENF LGCATMASHQ YGSTASPQRD SMVLSLDSAF YNQEPYRQQN 120 HFYAGLSCNP MYQTTDEQTH MSEDEIPCLK TWMDQNQVLE NQVNNSSNND IANDRVVMGC 180 GDLQSLTLSM SPGSQSSCVT ASRHISPTET NEGVITETKK RGLEKIPQKQ TVHRKSIDTF 240 GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR AYDLAALKYW 300 GASTHINFPL ENYHHELEEM KNMTRQEYVA HLRRRSSGFS RGASMYRGVT RHHQHGRWQA 360 RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGANAVT NFDISRYDVE KIMASNTLPT 420 GEIARRNKDR EPNLEVSATE YNTVVPGNEQ CAQVKSVGNV PDWKIGLHNQ VNSTTEPINV 480 RTMNIGNYQS SPFPVGLHDL IGIDSSQTLV DESSAHVIQH LSNPSSLLTS LSSSREASPD 540 KKRTPPIAFA SLGPSSINSW IPTAQLRPVP LTMAQLPVFA SWDEA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV54518.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022870872.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-154 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2Z7DAW0 | 0.0 | A0A2Z7DAW0_9LAMI; Uncharacterized protein | ||||
STRING | POPTR_0005s19220.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-141 | AP2 family protein |