PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54511.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TALE
Protein Properties Length: 366aa    MW: 42095.2 Da    PI: 6.1049
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54511.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-092943282155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yps++e+  LA+++gL+++q+ +WF N+R ++
  KZV54511.1 294 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 328
                 669*****************************885 PP
2ELK37.93.8e-13248269122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK++LlrKYsgyL+sLkqE+s
  KZV54511.1 248 ELKNHLLRKYSGYLSSLKQELS 269
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.4E-23104148IPR005540KNOX1
PfamPF037907.8E-24105147IPR005540KNOX1
SMARTSM012564.7E-29155206IPR005541KNOX2
PfamPF037912.8E-24160205IPR005541KNOX2
SMARTSM011883.5E-7248269IPR005539ELK domain
PROSITE profilePS5121311.296248268IPR005539ELK domain
PfamPF037892.6E-10248269IPR005539ELK domain
PROSITE profilePS5007112.957268331IPR001356Homeobox domain
SuperFamilySSF466891.41E-19269343IPR009057Homeodomain-like
SMARTSM003892.8E-13270335IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-27273332IPR009057Homeodomain-like
CDDcd000861.69E-11280332No hitNo description
PfamPF059201.0E-16288327IPR008422Homeobox KN domain
PROSITE patternPS000270306329IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEGYNHLGEN TNSRGNFLYM GPVLAPTSSL YGRTNPQINT FHLQSADCYD QSEAVHQNPT  60
VKTEAGTSQI HALRFNYPSI NRGHQDVQDH PGRQESESTC SEVDAIKAKI IAHPQYSNLL  120
EAYMDCQKVG APPEVVARLT AVRQEFEARQ RNGSAARESS KDPELDQFME AYYDMLVKYR  180
EELTRPLQEA MEFMRRIESQ LNMITNCPVR ILNSEEKCEG VVSSEEEQEN SCGETELAEI  240
DPRAEDRELK NHLLRKYSGY LSSLKQELSK KKKKGKLPKD ARQKLLSWWE LHYKWPYPSE  300
SEKVALAEST GLDQKQINNW FINQRKRHWK PSEDMPFMVM DGLHPQNAAI YMDGHYMGEG  360
PYRLGP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54511.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022870906.10.0homeotic protein knotted-1 isoform X2
SwissprotO041351e-174KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A2Z7DBT20.0A0A2Z7DBT2_9LAMI; Homeobox protein knotted-1-like 2
STRINGVIT_18s0001g08380.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-145KNOTTED-like from Arabidopsis thaliana