PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV54212.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 470aa MW: 51898.6 Da PI: 8.5035

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV54212.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	53	73	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H KZV54212.1 53 CEICGKGFQRDQNLQLHRRGH 73 *******************88 PP
2	zf-C2H2	13.5	0.00022	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ KZV54212.1 127 WKCEKCSKRYAVQSDWKAHSKTC 149 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.1E-5	50	73	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.4E-6	50	73	No hit	No description
SMART	SM00355	0.076	51	73	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.489	51	73	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	53	73	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.5E-4	115	148	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.4E-6	122	147	No hit	No description
SMART	SM00355	130	127	147	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MADDEIFTQN PINGSINPPF AKKKRSLPGT PDPEAEVIAL SPKTLMATNR FLCEICGKGF 60 QRDQNLQLHR RGHNLPWKLK QRTSKEVRKR VYVCPEKTCV HHHPSRALGD LTGIKKHFCR 120 KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYKCDCGA IFSRRDSFIT HRAFCDALAE 180 ETARISASSH HMNNHAPANM NFQFIGASSL GPTPCMGQNF PPIFKPIASD NTNINAVHIR 240 RGLSLWNMAQ NPGQTQDYTP ETLEEMHPLG INHVSLVTIN NFSTHDSLIT HPCSNTPQVS 300 NFNHLNWDFG SKLSSNNGTQ DLANDQSGLP LSTSDIKDVS VPSLFSTQHQ IISHQPSSAT 360 MSATALLQKA AQMGATTTDP SILGKFGLNS NESIITVQEN SFGQVCGASS VSSELVSAEE 420 NGLAALKQSQ MHPSKRHRMM NDEISVGETR DFLGVGIQSL CQPPSINGWT

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MADDEIFTQN PINGSINPPF AKKKRSLPGT PDPEAEVIAL SPKTLMATNR FLCEICGKGF  60
QRDQNLQLHR RGHNLPWKLK QRTSKEVRKR VYVCPEKTCV HHHPSRALGD LTGIKKHFCR  120
KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYKCDCGA IFSRRDSFIT HRAFCDALAE  180
ETARISASSH HMNNHAPANM NFQFIGASSL GPTPCMGQNF PPIFKPIASD NTNINAVHIR  240
RGLSLWNMAQ NPGQTQDYTP ETLEEMHPLG INHVSLVTIN NFSTHDSLIT HPCSNTPQVS  300
NFNHLNWDFG SKLSSNNGTQ DLANDQSGLP LSTSDIKDVS VPSLFSTQHQ IISHQPSSAT  360
MSATALLQKA AQMGATTTDP SILGKFGLNS NESIITVQEN SFGQVCGASS VSSELVSAEE  420
NGLAALKQSQ MHPSKRHRMM NDEISVGETR DFLGVGIQSL CQPPSINGWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	123	191	3	71	Zinc finger protein JACKDAW
5b3h_F	1e-35	123	191	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00125	DAP	Transfer from AT1G03840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV54212.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100239.1	0.0	zinc finger protein NUTCRACKER
Swissprot	Q9ZWA6	1e-145	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A2Z7D3N6	0.0	A0A2Z7D3N6_9LAMI; Uncharacterized protein
STRING	EOX99537	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-138	C2H2 family protein

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]