PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV54209.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C3H

Protein Properties

Length: 379aa MW: 42890.1 Da PI: 7.7646

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV54209.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.5	9.8e-08	130	150	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G+C+ Gd+C F+Hg KZV54209.1 130 VCSEFRK-GYCNKGDNCEFSHG 150 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.5E-6	125	151	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.131	126	152	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.77E-5	127	150	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-4	129	152	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-5	130	150	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.042	160	184	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7	160	183	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010187	Biological Process	negative regulation of seed germination
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MGSTSTVCDE HQHKFHHSHQ PYLNKKSLRE IDIPPRKLLS RRSAAAHPQM SDVFSDSPKA 60 EDALSKFLPC NNVDEDDSDP YSSDQFRIYE FKVRKCTRSR SHDWTDCPFA HPGEKARRRD 120 PRRFHYSGTV CSEFRKGYCN KGDNCEFSHG VFECWLHPSR YRTEACKDGK NCKRKVCFFA 180 HSTKQLRMSP DPSSPPAMSS PMSEKVYRNL NHCCVFCHAS PTSPLMGMSH LSPPLSPPLS 240 PPVNTPDQFS RLSSMESCGF PDGGISYKDA LTELMCSMES MRVKEAPVSH SATVMTTANR 300 RNLPWLDVNN FNVEMEQPQF LLSPSTPSPG TSNLCTGESR FFNGNFSGRN LMEDYSRYNN 360 NESNLQGGPD LGWVNDLLT

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MGSTSTVCDE HQHKFHHSHQ PYLNKKSLRE IDIPPRKLLS RRSAAAHPQM SDVFSDSPKA  60
EDALSKFLPC NNVDEDDSDP YSSDQFRIYE FKVRKCTRSR SHDWTDCPFA HPGEKARRRD  120
PRRFHYSGTV CSEFRKGYCN KGDNCEFSHG VFECWLHPSR YRTEACKDGK NCKRKVCFFA  180
HSTKQLRMSP DPSSPPAMSS PMSEKVYRNL NHCCVFCHAS PTSPLMGMSH LSPPLSPPLS  240
PPVNTPDQFS RLSSMESCGF PDGGISYKDA LTELMCSMES MRVKEAPVSH SATVMTTANR  300
RNLPWLDVNN FNVEMEQPQF LLSPSTPSPG TSNLCTGESR FFNGNFSGRN LMEDYSRYNN  360
NESNLQGGPD LGWVNDLLT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269\|PubMed:18487351}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV54209.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100356.1	1e-156	zinc finger CCCH domain-containing protein 2-like
Swissprot	Q9ZWA1	8e-86	C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A2Z7D6Q2	0.0	A0A2Z7D6Q2_9LAMI; Zinc finger CCCH domain-containing protein 2
STRING	Migut.M00160.1.p	1e-132	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10595	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	4e-78	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chang G, et al. AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana. Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238 [PMID:29723526]