PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54105.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 758aa    MW: 85643 Da    PI: 6.5152
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54105.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.32.8e-1173867562374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL+ cA+av+++d + a+++L++++e+a+p+gd mqRla+yf+ +L+ar+a+s++++yk+l   +ts    ++ l+a++++  ++P+ k s++ aN+
  KZV54105.1 386 RTLLTLCAQAVAADDRRTANEFLKQIREHATPTGDGMQRLAHYFADGLEARMAGSGTQIYKSLLNIPTS---AADILKAYHIYLATCPFRKTSNFFANK 481
                 789************************************************************999988...8************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 +I++ +++++++HiiDf+i +G+QWp++lq L+sRp+gpp+lRiTg++ p +g   ++++eetg+rL+++A+++++pfefn+ +a+++e+++l++L+++
  KZV54105.1 482 TIMNVAAKATKLHIIDFGILYGFQWPCFLQRLSSRPGGPPKLRITGIDFPCPGfrPSQRVEETGRRLENYARTFNIPFEFNA-IAQKWETIKLKDLKIN 579
                 **************************************************99999***************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 ++E+l+Vn+ ++l +llde+v ++s+r+ v++l+++++P+v+v    +   n++ F +rf eal +ys++fd+l+a++pre +er+ +E+ ++gre++n
  KZV54105.1 580 KDETLVVNSLYRLRNLLDETVIVNSPRNIVINLIREMNPTVFVQGIMNGAFNAPFFITRFREALFHYSSFFDMLDANIPRECHERMLLEKTIFGREAMN 678
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 v+ace aer+er et+++W++r ++aGF+++pl++++ k++k  ++ ++++ + ++e+ +++++gWk+r +++++ W+
  KZV54105.1 679 VIACEAAERIERPETYKQWQARCMRAGFEQLPLDKEIKKTVKDKVESFYNKDFVIDEDCHWMLQGWKGRIVYALTTWK 756
                 *************************************************999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.592359736IPR005202Transcription factor GRAS
PfamPF035149.8E-115386756IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MDQNYRRHRE PTSGIKVNTK AVPVFSDPIK VHNQAVPVFS DPNLNNGSRV GGQFFDWNVD  60
NEPVPYCSNL DVTDQLSECD SHEDCDFSDV VLKYINHILM EEDVEEKSCM FQESAALQAA  120
EKSFFDVLGE QQPAPAVYQQ TPMLHHGGME NLDANSVEEG VHSRGVGDLR ILCPDLFSES  180
NSDDGFERRP VTVNSVSQTI SQSCYSSSSS SGTVLDCQVD SPISILGIPD IFTDSQSIMQ  240
FKRGFEEASK FLPDEGNLMV DLSYDKPFQK ERKEGSAGLA VKVEKNLHIE ESADVSRGKK  300
NSFHDNMGVE EARSKKQSAV YTESTVSSEM FDQVLLCSKG KNLSDLRRAL DEISKKNTAN  360
VQSKGLNSGK TQGKKSGSKR NVVDMRTLLT LCAQAVAADD RRTANEFLKQ IREHATPTGD  420
GMQRLAHYFA DGLEARMAGS GTQIYKSLLN IPTSAADILK AYHIYLATCP FRKTSNFFAN  480
KTIMNVAAKA TKLHIIDFGI LYGFQWPCFL QRLSSRPGGP PKLRITGIDF PCPGFRPSQR  540
VEETGRRLEN YARTFNIPFE FNAIAQKWET IKLKDLKINK DETLVVNSLY RLRNLLDETV  600
IVNSPRNIVI NLIREMNPTV FVQGIMNGAF NAPFFITRFR EALFHYSSFF DMLDANIPRE  660
CHERMLLEKT IFGREAMNVI ACEAAERIER PETYKQWQAR CMRAGFEQLP LDKEIKKTVK  720
DKVESFYNKD FVIDEDCHWM LQGWKGRIVY ALTTWKPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-503857565375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54105.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085020.10.0scarecrow-like protein 14
RefseqXP_011085021.10.0scarecrow-like protein 14
RefseqXP_011085022.10.0scarecrow-like protein 14
RefseqXP_011085023.10.0scarecrow-like protein 14
RefseqXP_011085025.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2Z7D3W70.0A0A2Z7D3W7_9LAMI; Scarecrow-like protein 14-like
STRINGMigut.F00778.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]